DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lhx5

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_032525.1 Gene:Lhx5 / 16873 MGIID:107792 Length:402 Species:Mus musculus


Alignment Length:309 Identity:100/309 - (32%)
Similarity:143/309 - (46%) Gaps:51/309 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            ||.|..||.|||.|.|...:||..|::||.|...|  .:.||.||.::|||.|:.:.||.||:.|
Mouse     5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNL--SEKCFSREGKLYCKNDFFRRFGTKCAGC 67

  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDD-RVLCKAHYLET---------- 126
            .:|||.||.||:||..||||.||.|..|.:||||||:..::|: :.:||..||.:          
Mouse    68 AQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNS 132

  Fly   127 -----------------------VEGGTTSSDEGCDGDGYHK-SKTKR--VRTTFTEEQLQVLQA 165
                                   .:..|:|..|..:.:...: |.|||  .|||...:||:.|:|
Mouse   133 VSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKA 197

  Fly   166 NFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQ-----------KKHIHAGKNKIREPEG 219
            .|.....|.....|::|..|||:.||.||||||.|:::           ::|......:...|.|
Mouse   198 AFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLG 262

  Fly   220 SSFARHINLQLT-YSFQNNAQNPMHLNGSKAGLYPTHESSMDELSQDSS 267
            ........|..| |::..:.|:..:..|.....:.....|..:...|||
Mouse   263 GRLDESEMLGSTPYTYYGDYQSDYYAPGGNYDFFAHGPPSQAQSPADSS 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 24/52 (46%)
LIM2_AWH 69..123 CDD:188765 28/54 (52%)
Homeodomain 149..205 CDD:459649 25/68 (37%)
Lhx5NP_032525.1 LIM1_Lhx1_Lhx5 5..56 CDD:188753 24/52 (46%)
LIM2_Lhx1_Lhx5 64..119 CDD:188761 28/54 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..186 8/61 (13%)
Homeodomain 181..237 CDD:459649 23/55 (42%)
PHA03378 <247..>392 CDD:223065 12/65 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..402 4/14 (29%)

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