DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lhx1

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_032524.1 Gene:Lhx1 / 16869 MGIID:99783 Length:406 Species:Mus musculus


Alignment Length:371 Identity:113/371 - (30%)
Similarity:157/371 - (42%) Gaps:105/371 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            ||.|..||.|||.|.|...:||..|::||.|.|.|  .:.||.||.::|||.|:.:.||.||:.|
Mouse     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNL--TEKCFSREGKLYCKNDFFRCFGTKCAGC 66

  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDD-RVLCKAHYL--------ETVE 128
            .:|||.||.|||||..||||.||.|..|.:||||||:..::|: :.:||..||        .::.
Mouse    67 AQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLH 131

  Fly   129 GGTTSSDEGCDGDGYHKS-----------------------------KTKRVRTTFTEEQLQVLQ 164
            ..||.||.....|....|                             |.:..|||...:||:.|:
Mouse   132 SATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLK 196

  Fly   165 ANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK---------HIHA---GKNKIR-- 215
            |.|.....|.....|::|..|||:.||.||||||.|:::::         ..||   ...::|  
Mouse   197 AAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPL 261

  Fly   216 ----EP----EGSSFARHINLQL-------TYSF------QNNAQNPMHL--------NGSKAG- 250
                ||    ....|:.:.:.|.       .|.|      .:.||.|:.|        :|:..| 
Mouse   262 VDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGG 326

  Fly   251 ---------------------LYPTHESSMDELSQDSSVHCMPSEV 275
                                 .:|..:|...|.|....:|.|.:||
Mouse   327 LDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 25/52 (48%)
LIM2_AWH 69..123 CDD:188765 29/54 (54%)
Homeodomain 149..205 CDD:459649 23/55 (42%)
Lhx1NP_032524.1 LIM1_Lhx1_Lhx5 4..55 CDD:188753 25/52 (48%)
LIM2_Lhx1_Lhx5 63..118 CDD:188761 29/54 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..189 10/60 (17%)
Homeodomain 181..237 CDD:459649 23/55 (42%)
dnaA <263..>382 CDD:455861 20/110 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 294..372 13/77 (17%)

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