Protein Alignment Awh and Lmx1b

DIOPT Version :10

• Sequence 1: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Sequence 2: XP_063139064.1
• Gene: Lmx1b / 114501
• RGDID: 620843
• Length: 410
• Species: Rattus norvegicus
• Alignment Length: 253
• Identity: 96/253 - (37%)
• Similarity: 129/253 - (50%)
• Gaps: 37/253 - (14%)

  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            |..|..||||||.:.|...|||..||:|..|...|  ..||:.|:|::|||.||.:.|.||||.|
  Rat    56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDYQQLFAAKCSGC 118

  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY-------------- 123
            ...|:.:::|.||.|.|:||.||.|..|.|||..|::|.|.:.::|||..|
  Rat   119 MEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDE 183

  Fly   124 -----LETVEG------GTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQD 177
                 .|..:|      |..|.::|...||....:.||.||..|.:|.:..:|:|::.|.|..:.
  Rat   184 SDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKV 248

  Fly   178 LERIASVTGLSKRVTQVWFQNSRARQKK------HIHAGKNKIR----EPEGSSFARH 225
            .|.:|:.||||.||.||||||.||:.||      .....:|..|    ||:|....||
  Rat   249 RETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQGEPQGHGEQRH 306

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	24/52 (46%)
		LIM2_AWH	69..123	CDD:188765	24/53 (45%)
		Homeodomain	149..205	CDD:459649	26/55 (47%)
Lmx1b	XP_063139064.1	None