DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lmo3

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:XP_036021636.1 Gene:Lmo3 / 109593 MGIID:102810 Length:172 Species:Mus musculus


Alignment Length:144 Identity:47/144 - (32%)
Similarity:73/144 - (50%) Gaps:14/144 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQS-CFIRERQVYCKADYSKNFG 66
            |:.:.||.|...|.||:.|:.....||..||:|..|.|.|....| .:.:...:.|:.||.:.||
Mouse    35 TKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 99

  Fly    67 --AKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEG 129
              ..|:.|.:.|.|.:.|.||::.|:||.||||..|.::...|::|.|.::.:||:..|      
Mouse   100 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY------ 158

  Fly   130 GTTSSDEGCDGDGY 143
                 :||...:||
Mouse   159 -----EEGLMKEGY 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 17/53 (32%)
LIM2_AWH 69..123 CDD:188765 20/53 (38%)
Homeodomain 149..205 CDD:459649
Lmo3XP_036021636.1 LIM1_LMO1_LMO3 40..94 CDD:188774 17/53 (32%)
LIM2_LMO1_LMO3 104..158 CDD:188775 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.

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