DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32264 and Phactr4

DIOPT Version :9

Sequence 1:NP_728897.1 Gene:CG32264 / 38438 FlyBaseID:FBgn0052264 Length:1008 Species:Drosophila melanogaster
Sequence 2:XP_038967204.1 Gene:Phactr4 / 682920 RGDID:1592823 Length:752 Species:Rattus norvegicus


Alignment Length:825 Identity:253/825 - (30%)
Similarity:355/825 - (43%) Gaps:241/825 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 NSLGSGTRTPPLERKSKLSALGRFFKPWKWRRKKKSEKFEAASKSLERKISVRANRDELVQKGIL 345
            :|:.:|..|||.:||||.|..|:.|||||||:||.|:||:..|:.||||||:|..|:|||::|:|
  Rat    72 DSVEAGDTTPPTKRKSKFSGFGKIFKPWKWRKKKSSDKFKETSEVLERKISMRKPREELVKRGVL 136

  Fly   346 MPESPLGNIPEPGEESYYNNSNSGATANGSLLN------SAVHNN----SMSQANNSIN------ 394
            :.:      ||.|.|      :||..::.:|.|      .:|.::    |..:|..|:.      
  Rat   137 LED------PEQGGE------DSGKLSHAALKNGHTTPIGSVRSSSPILSEEEAEGSLRNLTPEE 189

  Fly   395 ------ATTGNPLISAA----QQQLNQGL-----PNSISVQQFNGQ-NQNPQNSMANGLVGGGGG 443
                  .:||:...|.|    :|...|.|     |.|.|.:...|| .:.|..|.|..:....|.
  Rat   190 DPKKRLGSTGSQPSSEAEPGPEQASKQPLLPPKRPLSSSDEGNEGQAKEVPAGSAARPVSSTSGS 254

  Fly   444 GGD------GSSD-----TSSLSGGVPHSQSAPQQLGVG---------------QPP-PPLTPLA 481
            |.:      .::|     |.|.....|....||:.|...               ||| ||..|..
  Rat   255 GIETPAATTAATDMTKTLTKSFVASTPAPTPAPRTLPAAPASTNTTATHPAPAKQPPIPPPKPAQ 319

  Fly   482 QHHQALAQQLQQRFAISNNNEPRKDKTDAQQQQHGGNGTISTPNIEQPTCQGSMLPPPGGGGHHQ 546
            ::...:..:|.|..                     .:||:    :.:|:   ..|||..|.....
  Rat   320 RNSNPIIAELSQAM---------------------NSGTL----LSKPS---PPLPPKRGIPSTS 356

  Fly   547 VDGSGKMERPNTLAGANKLTRRGVNICYHNEHMYGEDGKMVGGPPGSTPPPYPGGKLPPGVMLSE 611
            | .|.:.....|...||....:.|::|..              ||.:.||..|...||..:.   
  Rat   357 V-SSSEPAASATAKTANDQREKTVSLCLE--------------PPLTIPPSSPSPPLPTHIP--- 403

  Fly   612 LPEPPIPLSEIGPIPPPPMFSTPSPTLIAGRPHGPGAVNDQDYQQDYDYDDNDPD--QDELDSDD 674
             ||||     ..|:.|...|.     ::......|.....||..|..|.....|.  ||:     
  Rat   404 -PEPP-----RSPLVPAKTFQ-----MVPEVEFSPSLDRFQDISQQEDQKKEVPKKIQDQ----- 452

  Fly   675 EYAPYGGNHVRMMDTQRVEEIPAKEPKPNAVPLKSALKKKGGMQPASASTPVTPTQE--HGAGSA 737
               .:|.:|           ||::.|   .|||...::     |..::..||||..|  |.|.|.
  Rat   453 ---SFGESH-----------IPSRLP---PVPLHIRIQ-----QALTSPLPVTPPLEGTHRAHSL 495

  Fly   738 --ATAAAMANSNGGIGSMAAAAAAAAQQSANQRPLVVRQDAAGNNYSLKPILRPRIRLCRQQMFN 800
              .::.:.:...|.:|                                      |.|        
  Rat   496 LFESSDSFSEDTGTLG--------------------------------------RTR-------- 514

  Fly   801 IQLPCTVE--------NKENARPFV---------------IRESSSDSD-DSDGHIVYRDEDNDN 841
             .||.|:|        .:|...|||               ::|...:|| ||:|.|.||||:.|:
  Rat   515 -SLPITIEMLKVPDDDEEEQICPFVEDMTSTSATPKLPPCLQEEEKESDSDSEGPIQYRDEEEDD 578

  Fly   842 -------TRLA-KLARKESLSLKLQLRPDKQDLINRNILHQVNDNELKESKEAIGARLIRRLSMR 898
                   :.|| ::.||::|::||..||.:.: .:.:.....:..|..|.:..||..||||||.|
  Rat   579 DDDESYQSALANRVKRKDTLAMKLSSRPSEPE-TSLSSWPCKSKEEWNEIRHQIGNTLIRRLSQR 642

  Fly   899 PTAEELVERNILKTQSPAEEKKQKEEKKSYLLRKLSFRPTVEELKEKKIIRFNDYIEVTQAHDYD 963
            ||||||.:||||:.::.|:.:.:|.|.|..|.||||.||||.||..:||:|||:|:|||.|.|||
  Rat   643 PTAEELEQRNILQPKNEADRQAEKREIKRRLTRKLSQRPTVAELLARKILRFNEYVEVTDAQDYD 707

  Fly   964 RRADKPWTRLTPKDKAAIRKELNEFKSSEMAVHEGSRHLTRFHRP 1008
            ||||||||:|||.|||||||||||||||||.||..|:|.||:|||
  Rat   708 RRADKPWTKLTPADKAAIRKELNEFKSSEMEVHVDSKHFTRYHRP 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32264NP_728897.1 RPEL 325..347 CDD:280851 13/21 (62%)
RPEL 851..876 CDD:128947 5/24 (21%)
RPEL 889..914 CDD:128947 17/24 (71%)
RPEL 927..952 CDD:128947 15/24 (63%)
Phactr4XP_038967204.1 RPEL 117..139 CDD:397053 13/21 (62%)
PHA03247 <186..568 CDD:223021 102/512 (20%)
RPEL 634..658 CDD:128947 17/23 (74%)
RPEL 671..696 CDD:128947 15/24 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340357
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12751
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X711
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.030

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