DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dar1 and Klf5

DIOPT Version :9

Sequence 1:NP_001097493.1 Gene:dar1 / 38436 FlyBaseID:FBgn0263239 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_445846.3 Gene:Klf5 / 84410 RGDID:621446 Length:443 Species:Rattus norvegicus


Alignment Length:403 Identity:139/403 - (34%)
Similarity:184/403 - (45%) Gaps:125/403 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 HPPSAAASATASATATPTAQLGAQQQQQQQQQQQLQQLCPPAAPSTPSTSS-SSISSSSAS---- 510
            |||   |...|:....|:.:|       .|.:.::::...|..|..|..|. ......|||    
  Rat    57 HPP---APPPAAGPRLPSEEL-------VQTRCEMEKYLTPQLPPVPIISEHKKYRRDSASVVDQ 111

  Fly   511 ----------SASRHMFVPPLT---------------------------------PPSSDPGSPG 532
                      |.:.::|:|.:|                                 ||   |.:|.
  Rat   112 FFTDTEGLPYSINMNVFLPDITHLRTGLYKSQRPCVTQIKTEPVTIFSHQSESTAPP---PPAPT 173

  Fly   533 SSMVAAAAAAAAQRRTTP------------------PPPYQQGHVMGLINPP-----------PT 568
            .::....:..::.:.|.|                  ..|.||||:..|:|.|           ..
  Rat   174 QALPEFTSIFSSHQTTAPEVNNIFIKQELPIPDLHLSVPSQQGHLYQLLNTPDLDMPSSTNQTAV 238

  Fly   569 LQLLGGAATGSNNSCTTTLTTLTPASAIQQQQQQP------QQQQVPQQQP--PPTPRSSGGGRR 625
            :..|..:..|.|:.     .:..|.::::|.|..|      ..|.:|||..  ||:|.||..|..
  Rat   239 MDTLNVSMAGLNSH-----PSAVPQTSMKQFQGMPPCTYTMPSQFLPQQATYFPPSPPSSEPGSP 298

  Fly   626 GRHSH------HQPGTAAHIASLM----------------SVRTVRYNRRNNPELEKRRIHHCDF 668
            .|.:.      ..|..||.|||.:                :::.||||||:||:|||||||.||:
  Rat   299 DRQAEMLQNLTPPPSYAATIASKLAIHNPNLPATLPVNSPNIQPVRYNRRSNPDLEKRRIHFCDY 363

  Fly   669 VGCSKVYTKSSHLKAHQRIHTGEKPYTCQWPECEWRFARSDELTRHYRKHTGAKPFKCIVCERSF 733
            .||:||||||||||||.|.|||||||.|.|..|:||||||||||||||||||||||:|:||.|||
  Rat   364 DGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCVVCNRSF 428

  Fly   734 ARSDHLALHMKRH 746
            :||||||||||||
  Rat   429 SRSDHLALHMKRH 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dar1NP_001097493.1 COG5048 641..>724 CDD:227381 63/98 (64%)
C2H2 Zn finger 671..688 CDD:275368 14/16 (88%)
zf-H2C2_2 680..707 CDD:290200 19/26 (73%)
C2H2 Zn finger 696..718 CDD:275368 17/21 (81%)
zf-H2C2_2 710..735 CDD:290200 21/24 (88%)
C2H2 Zn finger 726..746 CDD:275368 16/19 (84%)
Klf5NP_445846.3 KLF5_N 3..356 CDD:410335 67/316 (21%)
COG5048 345..>419 CDD:227381 60/73 (82%)
C2H2 Zn finger 361..383 CDD:275368 17/21 (81%)
C2H2 Zn finger 391..413 CDD:275368 17/21 (81%)
zf-H2C2_2 405..430 CDD:404364 21/24 (88%)
zf-C2H2 419..441 CDD:395048 17/21 (81%)
C2H2 Zn finger 421..441 CDD:275368 16/19 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11516
eggNOG 1 0.900 - - E33208_3BRQ6
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006531
OrthoInspector 1 1.000 - - oto98751
orthoMCL 1 0.900 - - OOG6_107236
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3166
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.770

Return to query results.
Submit another query.