DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dar1 and sptf-3

DIOPT Version :10

Sequence 1:NP_001097493.1 Gene:dar1 / 38436 FlyBaseID:FBgn0263239 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_493353.3 Gene:sptf-3 / 189783 WormBaseID:WBGene00012735 Length:412 Species:Caenorhabditis elegans


Alignment Length:530 Identity:138/530 - (26%)
Similarity:177/530 - (33%) Gaps:209/530 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 QLPQVKMEAIDESLLETFSTP------LLSPLEIKTEKQQRQQQH----------------QHQQ 317
            |..|.||..:..   :..:||      ||.|.:  :..||||.|.                .:|.
 Worm    18 QQQQGKMMVVHH---QRTTTPDGSQVYLLQPSQ--SHPQQRQVQFIPIQVAQGEKKPQTVMMNQM 77

  Fly   318 QQQQQQQQQQQHQQQHQQQYQQQHYQQHYQQQHLYQHHPSLALPGLPPAVDVVELQLQQQHQ--Q 380
            ..||||||.....||.|||.|||..|.| |.|.:.||                  |:|||:|  |
 Worm    78 MGQQQQQQPSSSNQQSQQQVQQQQQQVH-QVQQVQQH------------------QMQQQNQTVQ 123

  Fly   381 QQHLQHNNSSSSSPKLATPGDNSGNTSSYQQQYASQLVSGSGGGYLNGSSSNSYGYSWHSSQSFH 445
            ||||.                             .:.:...|.|.:..|:.|:            
 Worm   124 QQHLM-----------------------------METIDQVGSGIIGNSNGNN------------ 147

  Fly   446 TKYQIHPPSAAASATASATATPTAQLGAQQQQQQQQQQQLQQLCP-PAAPSTPSTSSSSISSSSA 509
                                         ||||||||||.|:..| |.||               
 Worm   148 -----------------------------QQQQQQQQQQQQRRDPIPIAP--------------- 168

  Fly   510 SSASRHMFVPPLTPPSSDPGSPGSSMVAAAAAAAAQRRTTPPPPYQQGH---------VMGLINP 565
                                   :.||:.......|::    |..||.|         ..|.:|.
 Worm   169 -----------------------AGMVSGQRMQQQQQQ----PQQQQQHNNNNTGASTSNGGVNA 206

  Fly   566 PPTLQLLGGAATGSNNSCTTTLTTLTPASAIQQQQQQPQQQQVPQQQPPPTPRSSGGGRRGRHSH 630
            .|.:.::||..       ..||..|    ..||....||:..:..:.||....|:...:..:..|
 Worm   207 APVMPVMGGQQ-------RITLGNL----HFQQDPNDPQKWIITNEGPPVAGPSAPARKPNQIQH 260

  Fly   631 HQP------------------------GTAAHIASLMSVRTVRYNRRNNPELEKRRIHHCDFVGC 671
            .|.                        |.|....:......::.|.|...  .|.|||.|..  |
 Worm   261 RQMIPQMNEDGMMNMGNDYGDINGQGLGEAPKRCACTCPNCLQQNNRQGD--GKSRIHICHL--C 321

  Fly   672 SKVYTKSSHLKAHQRIHTGEKPYTCQWPECEWRFARSDELTRHYRKHTGAKPFKCIVCERSFARS 736
            :|.|.|:|||:||.|.|.|.||:.|.|..|..:|.|||||.||.|.|||.|.|.|..|.:.|.||
 Worm   322 NKTYGKTSHLRAHLRGHAGNKPFACDWQHCNKKFTRSDELQRHRRTHTGEKRFACNHCGKKFMRS 386

  Fly   737 DHLALHMKRH 746
            |||..|.:.|
 Worm   387 DHLTKHERTH 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dar1NP_001097493.1 COG5048 641..>724 CDD:227381 37/82 (45%)
C2H2 Zn finger 671..688 CDD:275368 10/16 (63%)
C2H2 Zn finger 696..718 CDD:275368 12/21 (57%)
zf-H2C2_2 710..735 CDD:463886 13/24 (54%)
C2H2 Zn finger 726..746 CDD:275368 9/19 (47%)
sptf-3NP_493353.3 COG5048 <311..406 CDD:227381 46/88 (52%)
C2H2 Zn finger 318..338 CDD:275368 11/21 (52%)
C2H2 Zn finger 346..368 CDD:275368 12/21 (57%)
zf-H2C2_2 360..383 CDD:463886 12/22 (55%)
C2H2 Zn finger 376..396 CDD:275368 9/19 (47%)

Return to query results.
Submit another query.