DRSC/TRiP Functional Genomics Resources

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Protein Alignment dar1 and sp4

DIOPT Version :10

Sequence 1:NP_001097493.1 Gene:dar1 / 38436 FlyBaseID:FBgn0263239 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_002933342.2 Gene:sp4 / 100494434 XenbaseID:XB-GENE-983118 Length:775 Species:Xenopus tropicalis


Alignment Length:819 Identity:200/819 - (24%)
Similarity:283/819 - (34%) Gaps:277/819 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 EPADVEL----------EVLAAAAAAANNNNNTSSN----NNHSSNSSSNNSNGSQTPNGNNNSS 89
            :|..:||          :::|||...:..||.|...    .:.:::||.|:.|.|.|.:..:|::
 Frog    76 QPQQLELVTTQLAGSAWQIVAAAPPVSKENNITQQGVAIAASTAASSSINSENASPTKSKPSNAA 140

  Fly    90 LA-----------TGGHQHHQFHHHLHHHHSHQHHHQHHHLHQHHSHSLQ--SGE---------- 131
            .|           .||:..:|....:.....     ||..:...::.:||  .|:          
 Frog   141 TAPGQFQVIQVQTPGGNVQYQVIPQIQTVEG-----QHIQISPGNTTALQDLQGQIQFIPAGNNQ 200

  Fly   132 ----SGASEAWPHLPAPSYASDVPHAQQQ-------QLQP-AGSPNS-------NSNGAYGCAPL 177
                :|...|..::.|.:.|:.....|.:       |||. .|:|..       |..|.....|:
 Frog   201 AIITAGNRTASGNIIAQNLANQTVPVQIRPGVSIPLQLQTIPGAPAQVVTTLPINIGGVTLALPV 265

  Fly   178 YDGAPYEVALGYGGAVVASTGGATSSDKEYLYETKNKEALYADPLDDPYQRPVLWDDITTSIQNI 242
            .:..|   |.|....:|..|.|..|          |...|.:.|             ||||..:.
 Frog   266 INSMP---AGGGSAQIVQPTDGGVS----------NGNQLLSTP-------------ITTSSVST 304

  Fly   243 DPENALMLSSSGSSNNNGSSNSSSNT--GESATSQLPQVKMEA---IDESLLETFSTPLLSPLEI 302
            .||:....|||..:....::.:||:|  ..:.|:|.......|   .:||..........|..::
 Frog   305 MPESPSSSSSSTCTTTVSATLTSSDTLVSSAETNQYTSTSASAERNTEESPSSVTDGEAQSSNQL 369

  Fly   303 KTEKQQRQQQHQHQQQQQQ-------QQQQQQQHQQQHQQQYQQQHYQQHYQQQHLYQHHPSLAL 360
            ::...|...:..:..||.|       ||.|.||.|||..|...||.:|                 
 Frog   370 QSNGLQNMSEQSNSLQQVQIVGQPVLQQIQIQQPQQQIIQAIPQQSFQ----------------- 417

  Fly   361 PGLPPAVDVVELQLQQ--QHQQQQHLQHNNSSSSSPKLATPGDNSGNTSSYQQQYASQLVSGSGG 423
                       ||..|  |..|||.||:....:.||                             
 Frog   418 -----------LQSGQTIQTLQQQQLQNVQLQALSP----------------------------- 442

  Fly   424 GYLNGSSSNSYGYSWHSSQSFHTKYQIHPPSAAASATASATATPTAQLGAQQQQQQQ-QQQQLQQ 487
                                  |:..|..|          |.||:.|:..|..|.|. |..|..|
 Frog   443 ----------------------TQVLIRAP----------TLTPSGQISWQTVQVQNIQSLQNLQ 475

  Fly   488 LCPPAAPS----TP-STSSSSISSSSAS----------SASRHMFVPPLTPPSSDPGSPGSSMVA 537
            :..|..|.    || ||||.:..:..|.          :|:....||.|...|          ||
 Frog   476 VQNPGLPQQLTLTPVSTSSGTTIAQIAPVTVAGTPITLNAAHFTSVPNLQTVS----------VA 530

  Fly   538 AAAAAAAQRRTTPPPPYQQGHVMGLINPPPTLQLLGGAATGS-----------------NNSCTT 585
            ...||..|             |.|:   |.|:..:||...|:                 ......
 Frog   531 NLGAAGVQ-------------VQGV---PVTITSVGGQQQGAEGVKVQQATIAPVTVAVGGIANA 579

  Fly   586 TLTTLTP--ASAIQQQQQQPQQQQVPQQQPPPTPRSSGGGRRGRHSHHQPGTAAHIASLMSVRTV 648
            |:..::|  .:.:|.||.||...|..|.           |:|.|          .:|  .|....
 Frog   580 TIGAVSPDQLTQVQLQQSQPSSDQEVQT-----------GKRLR----------RVA--CSCPNC 621

  Fly   649 RYNR-RNNPELEKRRIHHCDFVGCSKVYTKSSHLKAHQRIHTGEKPYTCQWPECEWRFARSDELT 712
            |... |.|.|..|::.|.|....|.|||.|:|||:||.|.||||:|:.|.|..|..||.|||||.
 Frog   622 REGEGRGNSEPGKKKQHICHIENCGKVYGKTSHLRAHLRWHTGERPFVCNWIFCGKRFTRSDELQ 686

  Fly   713 RHYRKHTGAKPFKCIVCERSFARSDHLALHMKRHLPKNK 751
            ||.|.|||.|.|:|..|.:.|.|||||:.|:|.|  :||
 Frog   687 RHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTH--QNK 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dar1NP_001097493.1 COG5048 641..>724 CDD:227381 41/83 (49%)
C2H2 Zn finger 671..688 CDD:275368 11/16 (69%)
C2H2 Zn finger 696..718 CDD:275368 13/21 (62%)
zf-H2C2_2 710..735 CDD:463886 13/24 (54%)
C2H2 Zn finger 726..746 CDD:275368 10/19 (53%)
sp4XP_002933342.2 SP4_N 22..639 CDD:411773 151/731 (21%)
zf-C2H2 638..662 CDD:395048 13/23 (57%)
C2H2 Zn finger 640..662 CDD:275368 12/21 (57%)
zf-H2C2_2 654..681 CDD:463886 15/26 (58%)
C2H2 Zn finger 670..692 CDD:275368 13/21 (62%)
zf-H2C2_2 684..707 CDD:463886 12/22 (55%)
zf-C2H2 698..720 CDD:395048 11/21 (52%)
C2H2 Zn finger 700..720 CDD:275368 10/19 (53%)

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