DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycJ and CYCD5;1

DIOPT Version :10

Sequence 1:NP_523903.1 Gene:CycJ / 38428 FlyBaseID:FBgn0010317 Length:386 Species:Drosophila melanogaster
Sequence 2:NP_195478.2 Gene:CYCD5;1 / 829917 AraportID:AT4G37630 Length:323 Species:Arabidopsis thaliana


Alignment Length:377 Identity:69/377 - (18%)
Similarity:135/377 - (35%) Gaps:107/377 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VERLAK--THWLT-----DYARDIFLTMREQELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLS 84
            :||..|  .|:.|     ||..|:.|   ::.|....|...:...::|...:..:....:.....
plant    28 IERSDKQEPHFTTTIDDEDYVADLVL---KENLRFETLPSKTTSSSDRLIAIDWILTTRTRFGFQ 89

  Fly    85 RCALHLAVYYMD-----RFVDYYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAY 144
            ....::|:.|.|     ||:...|.....:.|:::.||.:||::|  :..:|..|:..:.....:
plant    90 HQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSLAAKME--ERIVPGLSQYPQDHDFVF 152

  Fly   145 TAFEYKAVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNHHTQPYQRYI 209
            .....:..|..||..|::::              :.:|...:.||  .|.:..:::|:      :
plant   153 KPDVIRKTELLILSTLDWKM--------------NLITPFHYFNY--FLAKISQDNHS------V 195

  Fly   210 SFEEML-----SILAQLLLRMADYTLYISRFANDLPSLLAAACIAAVRQVSGVRRWSEYLVGLTS 269
            |.:.:|     |:||  |.:...:|.|.......:.:|||::..:     |.:|        ||.
plant   196 SKDLVLLRSSDSLLA--LTKEISFTEYRQFVVAAVTTLLASSSTS-----SDIR--------LTR 245

  Fly   270 YTEANVEPYMNVLTDYYYYHVIQTDYGSPSVQTNQSLASPDSGFEESFTENTNLVVS-DEVVTVE 333
            ...||                   .:||.|..|:              .||.|:.:. ...:.:|
plant   246 EEIAN-------------------KFGSISWWTS--------------NENENVYLCYQRTLEIE 277

  Fly   334 TYNIIT------VQLQDPSPHSSTFLPKEQTNLKRSRFEDDTENQHPLKHAK 379
            ....:|      |..:.|:..|..        .:|..|:|..::..|.|..:
plant   278 ERKHMTPPPEIAVSREPPASGSGA--------KRRLSFDDSDQSSPPAKRMR 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycJNP_523903.1 CYCLIN_CCNJ-like_rpt1 61..162 CDD:410231 19/105 (18%)
CYCLIN_CCNJ-like_rpt2 167..282 CDD:410232 22/119 (18%)
CYCD5;1NP_195478.2 CYCLIN_AtCycD-like_rpt1 71..170 CDD:410246 19/100 (19%)
CYCLIN_AtCycD-like_rpt2 175..272 CDD:410247 29/152 (19%)

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