DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CycJ and ccnb1

DIOPT Version :9

Sequence 1:NP_523903.1 Gene:CycJ / 38428 FlyBaseID:FBgn0010317 Length:386 Species:Drosophila melanogaster
Sequence 2:NP_571588.1 Gene:ccnb1 / 58025 ZFINID:ZDB-GENE-000406-10 Length:398 Species:Danio rerio


Alignment Length:310 Identity:70/310 - (22%)
Similarity:126/310 - (40%) Gaps:68/310 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 TDYARDIFLTMR--EQELSRRPLFYLSPQL--NERRRMLQLLKLATSAHKLSRCALHLAVYYMDR 97
            ::|.:||:|.:|  |.|.:.||.:....::  |.|..::..|.......:|.:..:::.|..:||
Zfish   135 SEYVKDIYLYLRQLETEQAVRPKYLAGKEVTGNMRAILIDWLVQVQIKFRLLQETMYMTVAIIDR 199

  Fly    98 FVDYYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYKAVERKILCFLNF 162
            |:..:.:...:|.||.:|.:.||::.|  :.:.|..::...:...|||..:.:.:|.|:|..|||
Zfish   200 FLQDHPVPKKQLQLVGVTAMFIASKYE--EMYPPEIADFAFVTDRAYTTSQIREMEMKVLRVLNF 262

  Fly   163 ELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNHHTQPYQRYISFEEMLSILAQ--LLLRM 225
            ...||        ....||.|:      ..:.:....|||               ||:  |.|.|
Zfish   263 GFGRP--------LPLQFLRRA------SKIGDVTAEHHT---------------LAKYFLELTM 298

  Fly   226 ADYTLYISRFANDLPSLLAAACIAAVRQVSGVRRWSEYLVGLTSYTEANVEPYMNVLTDYYYYHV 290
            .||.:     .:..||.:|:|..|...:|.....|:..|.....|||..:.|.|.        |:
Zfish   299 VDYDM-----VHYPPSQMASAAYALTLKVFNCGDWTPTLQHYMGYTEDELVPVMQ--------HI 350

  Fly   291 IQTDYGSPSVQTNQSLASPDSGFEESFTENTNLVVSDEVVTVETYNIITV 340
            .:.     .|:.|:.|:.             :|.|.::..:.:...|.|:
Zfish   351 AKN-----VVRVNEGLSK-------------HLAVKNKYSSQKQMRIATI 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycJNP_523903.1 Cyclin_N 42..164 CDD:278560 33/125 (26%)
Cyclin_C <225..>286 CDD:281044 16/60 (27%)
ccnb1NP_571588.1 Cyclin_N 140..262 CDD:278560 31/123 (25%)
Cyclin_C 267..385 CDD:281044 35/176 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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