Protein Alignment CycJ and cyb-3

DIOPT Version :10

• Sequence 1: NP_523903.1
• Gene: CycJ / 38428
• FlyBaseID: FBgn0010317
• Length: 386
• Species: Drosophila melanogaster
• Sequence 2: NP_506825.4
• Gene: cyb-3 / 180040
• WormBaseID: WBGene00000868
• Length: 385
• Species: Caenorhabditis elegans
• Alignment Length: 306
• Identity: 66/306 - (21%)
• Similarity: 120/306 - (39%)
• Gaps: 71/306 - (23%)

  Fly    22 CP--QADVERLAKTHWLTDYARDIFLTMREQELSRRPLFYL--SPQLNERRR------MLQLLKL 76
            ||  ..|:|.......::|||:.||...|.:|:..|...||  .|:::.:.|      |:::.:.
 Worm    93 CPHYDYDLEEAGNPDSISDYAQGIFDYYRHREVHFRVRKYLHKHPEVDVKTRAILIDWMVEIQET 157

  Fly    77 ATSAHKLSRCALHLAVYYMDRFVDYYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVK 141
            ....|:....|:.|...|:.:..:..|....||..|||   .|||:.:....  |...::..|..
 Worm   158 FELNHETLYNAVKLTDMYLCKTKNVDKNTIQKLACVAI---FIAAKYDERSP--PLVDDLIYLSG 217

  Fly   142 NAYTAFEYKAVERKILCFLNFELIRPTTASFVELF--AC-------------------------- 178
            :.::..|..|:||::...:.::|..|.:..::..|  .|
 Worm   218 DRFSRDELLAMERELFATVGYDLGSPLSYRYLRRFGRVCRVDMKTLTMGRFILETSLMVYEYAMV 282

  Fly   179 --SFLTRSDFKNYIEMLD---EYERNHHTQPYQRYISFEEMLSILAQLLLRMADYTLYISRFAND 238
              |.|..:.|...:.|||   |||.|...:.|..:.. ||::.::        ::..:|..|:.|
 Worm   283 SQSRLAAAAFVLAMRMLDKNNEYEWNPVLEKYSGFTG-EEVMPLV--------EHMNHILHFSKD 338

  Fly   239 LPSLLAAACIAAVRQ---------VSGVRRWSEYLVGLTSYTEANV 275
                 ..|.:.:|||         |:.:....:.|..:.|:|.|.|
 Worm   339 -----KWAQLTSVRQKYSHEVFFHVASIPMLPDTLKVVDSHTYAPV 379

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CycJ	NP_523903.1	CYCLIN_CCNJ-like_rpt1	61..162	CDD:410231	22/106 (21%)
		CYCLIN_CCNJ-like_rpt2	167..282	CDD:410232	29/151 (19%)
cyb-3	NP_506825.4	CYCLIN_CCNB3_rpt1	97..239	CDD:410212	34/146 (23%)
		CYCLIN_CCNB3_rpt2	243..362	CDD:410214	24/132 (18%)