DRSC/TRiP Functional Genomics Resources

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Protein Alignment armi and UPF1

DIOPT Version :9

Sequence 1:NP_001014556.1 Gene:armi / 38427 FlyBaseID:FBgn0041164 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_016882594.1 Gene:UPF1 / 5976 HGNCID:9962 Length:1137 Species:Homo sapiens


Alignment Length:610 Identity:163/610 - (26%)
Similarity:256/610 - (41%) Gaps:135/610 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   582 IGDTLRVINPWSDPDSQTTKSYEGIIHKVLFDRILLKFHSS----FQEKYNGEDYRLEFYFSRYS 642
            ||..::|      ||:.....     |....|.|.::..||    .:..:|   ::::|.:...|
Human   388 IGHVIKV------PDNANLTQ-----HTDYGDEIAIELRSSVGAPVEVTHN---FQVDFVWKSTS 438

  Fly   643 FRKQHHAIS---------------KIVGVMGEDFLFPSKVTKRENPQLDVYMKDDDMYLYDSKLE 692
            |.:...|:.               |::|...||.:...::.||...|          .|.|    
Human   439 FDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQ----------GLPD---- 489

  Fly   693 WYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNS 757
                 ||..|..||..:|:....    ::.||||:|||:|....:..|.|...|. :||..|||.
Human   490 -----LNHSQVYAVKTVLQRPLS----LIQGPPGTGKTVTSATIVYHLARQGNGP-VLVCAPSNI 544

  Fly   758 SADLVTKRL-----------IDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATSD-VGAVGSC 810
            :.|.:|:::           ..|:..:......|..:||:......||:.......| .|.:.|.
Human   545 AVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSA 609

  Fly   811 EDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFP---AGHFTHVLFDEAGQCTEPET 872
            ::|..   ..||...:.:.:....:...||...|:      |   ...|..:|.||:.|.||||.
Human   610 DEKRY---RALKRTAERELLMNADVICCTCVGAGD------PRLAKMQFRSILIDESTQATEPEC 665

  Fly   873 MVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYN 937
            |||:|:..|   |::|.||..||..:|..:.|:|.|.|.|..|||:              ..|..
Human   666 MVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV--------------VLGIR 713

  Fly   938 PLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFE---SEKDIPQAH 999
            |:   :|...||..|::.:..|.:||:..|...::..|        :::..|:   .:.|.|.  
Human   714 PI---RLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD--------RVKKGFDFQWPQPDKPM-- 765

  Fly  1000 GTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQVKML--RSMF 1062
              |||...|:....:...|:.|..|...|..:|..|.:|....|||||||||:.|...|  ...|
Human   766 --FFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQF 828

  Fly  1063 IGT-------DVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVS 1120
            .|:       :|   :|.||:.|||:|:|.|::|.||::|       ...:||:...:|||||::
Human   829 SGSLHTKLYQEV---EIASVDAFQGREKDFIILSCVRANE-------HQGIGFLNDPRRLNVALT 883

  Fly  1121 RARAMMIIFGNPHLLAVDECWRQLI 1145
            |||..:||.|||..|:....|..|:
Human   884 RARYGVIIVGNPKALSKQPLWNHLL 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armiNP_001014556.1 AAA_11 698..902 CDD:289831 61/218 (28%)
AAA_19 720..768 CDD:289986 18/58 (31%)
DNA2 <840..1155 CDD:224037 102/321 (32%)
UvrD_C_2 909..1132 CDD:304668 70/234 (30%)
UPF1XP_016882594.1 DNA2 145..928 CDD:224037 163/610 (27%)
DEXXQc_UPF1 489..722 CDD:350797 73/275 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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