DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment armi and helz2a

DIOPT Version :9

Sequence 1:NP_001014556.1 Gene:armi / 38427 FlyBaseID:FBgn0041164 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_003198895.2 Gene:helz2a / 562461 ZFINID:ZDB-GENE-120920-1 Length:2656 Species:Danio rerio


Alignment Length:1183 Identity:252/1183 - (21%)
Similarity:420/1183 - (35%) Gaps:357/1183 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 VIDK-DVLFETKVAEDIILDLHVGCVVEYLTFTTGEAMRVVKVKSILEHSWEDTSQKEIEKAVDN 155
            |||| ||.:.|       ||:::.|                     ||.|.::..|...|:..:.
Zfish  1695 VIDKTDVKYTT-------LDINLSC---------------------LEFSRKNDQQSAYERKANA 1731

  Fly   156 LKNEKPTFFNTETRSVLGLISQRLASSIDVETEYGQLTVELDNIEMNF---IPTNGDRVRLECNI 217
            |.                 .:.:|:|..:.:..|   .|||:.:..||   .|.|...:....:|
Zfish  1732 LH-----------------FALKLSSQSERKVAY---IVELNPLGTNFKVSFPLNRSSISENLDI 1776

  Fly   218 QLDDGFVDKQGEILEVTKLFPTRIQEGEKCIVERVY------VHMVVLGPETYILKTDLPTGTDL 276
            ...|..:..|.| .:||.  .:.|.:.|:    |:|      :|..|.......:...:|..|..
Zfish  1777 MSRDLLLAVQPE-FDVTN--NSMILKWER----RIYSFSNSHIHAEVKQQNPNSVMAYVPAKTWK 1834

  Fly   277 HLGDIV-------LADLIECQYSKFTRRAIKITPLEKNFGATKLTQQSSMGSSGSGKAVTVTGVN 334
            .:.|.:       :..|||              .|::|.|........::.:|...|........
Zfish  1835 CIADAIREQNWNAIFPLIE--------------ELQRNSGINARQFHETLSASKCTKNYDPLHAE 1885

  Fly   335 RFITAELW----QKESVSLKLTNNLNRTLRLESITVCNDSESQLSVVSPLESKEISSGSEITVTF 395
            .:  |||:    |.|:|.::|..:..|.|...||        ||.||.|              .|
Zfish  1886 HY--AELYLRIKQGEAVEVQLGASTARGLMTPSI--------QLFVVHP--------------KF 1926

  Fly   396 EIHTQFLGEAIE---KYVL-----NFDLLKVRRVFTVIVCK---TKEEVAEAEKRMIAAEALMAP 449
            ||..:.:.:.::   :|.|     :::|.|..:.....:|:   ....|||.|..:|....|...
Zfish  1927 EICVEHVRDPVKCFSEYALSSSRSSYNLYKDYQAIWRPMCEMESASSAVAENESILIVDVPLKWE 1991

  Fly   450 GRNSQERSRFYANQVWCNKVDVIPGQQIVTKRRFVALRLGCFEVPKELRQ--ICLTSERRQEMIK 512
            ..|.:....|:          ::|    :.|:       ..:.:..:||.  :|:.:..:::...
Zfish  1992 NSNPKRLQGFF----------LLP----LDKK-------SQWSIDCDLRNSFLCIRTRIQKQSSP 2035

  Fly   513 AIE--QHYSFLTEPLSIKTYMHRFRLLLHLEEIECFVNFRNYDRDRAHFLRDGEFLTLQIENLAE 575
            .:|  |:.:.:..| |....:|  .::...||.|            :....:.|..:|:|:.|..
Zfish  2036 FLESAQNTALMDIP-SFTWVVH--GVITEAEETE------------SKESTNQEPKSLRIDFLIN 2085

  Fly   576 RRPSLVIGDTLRVINPWSDPDSQTTKSYEGIIHKVLFDRILLKFHSSFQEKYNGEDYRLEFYFSR 640
            ..|...|.:.:         ..:.|:....:|.|:|.|          ..|.|..|         
Zfish  2086 HMPMTNIPEQI---------FHERTRFTLELIPKLLPD----------VRKENAID--------- 2122

  Fly   641 YSFRKQHHAISKIVGVMGEDFL------FPSKVTKRENPQLDVYMKDDDMYLYDSKLEWYNQS-- 697
             |..|.:..:..|  .||....      .|::.|.|                  .::..|:.|  
Zfish  2123 -SLTKANQLVKNI--AMGRRITSDRGCKIPNQNTGR------------------FEINSYHPSGL 2166

  Fly   698 --LNSIQKRAVFNILRGEAENIPYVLF-GPPGSGKTMTLIETLLQLVRNL-----PGAR---ILV 751
              ||:.|.:|:     .||...|:.|. ||||:|||:..:..|..|.:|:     .|::   ||.
Zfish  2167 SHLNNSQSKAI-----REALTNPFTLIQGPPGTGKTVVGVHILYWLHKNIQQLQASGSKKRAILY 2226

  Fly   752 GTPSNSSADLVTKRLI-------------DSKALLQ---------------------GDFIRLVS 782
            ..|||.|.|:|...|:             |...:|:                     .:...:..
Zfish  2227 CGPSNKSVDVVAGHLLHLRDHLKPLRVYSDQMEMLEFPYPGCNLKLSRNSKRGEKPNTELSSIAL 2291

  Fly   783 YNQVEKDLIP--PEIMSYCATSDVGAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGN 845
            ::.:.|:..|  .:|.::......|...:.|::.:..|...|.|...  :..|.:.:.|||.   
Zfish  2292 HHLIRKEGNPFSTQIRAFDMKVQRGDQLTDEERKLFREILKKARKHE--LLHHDVILCTCTA--- 2351

  Fly   846 FLQLGFPAGH--------FTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSR 902
                   |.|        |..::.||....||||..:|:|  ..|..|:||.||.:|||.:|...
Zfish  2352 -------ASHPALAETLDFKQIIIDECAMATEPEAFIPLV--AHKPEQIVLLGDHKQLQPVVHCE 2407

  Fly   903 IASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDEL 967
            :|.::|.|.|..||.:|                 |.|:|..   .||....|.:..|..||...|
Zfish  2408 VAERLGMSRSLFERYME-----------------NALMLDT---QYRMQEDICAFPSNEFYGGRL 2452

  Fly   968 ---IPVLSEKDSRESRLL---SKLRCVF-----ESEKDIPQAHGTFFYGIIGENRQNNDSPSWFN 1021
               ||.       :|:|.   :|..|:.     ..||           .::....|.|:: |..|
Zfish  2453 QTGIPA-------KSKLFLTQTKQTCIVFGHVEGKEK-----------SLVVRTEQGNEN-SKAN 2498

  Fly  1022 PQEVREVFLMTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDII 1086
            .:|..||..:.|.|..|.:....|.|:|||..||..:........:....:.::...||.|...:
Zfish  2499 MEEAEEVVRVAILLTEAGIKTKDIAILTPYNAQVAKISESLHNNHIRDITVNTIMRSQGSEWRYV 2563

  Fly  1087 LISTVRS--SEEILRMDARF----SLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLI 1145
            ::|||||  ..||.....:.    .|||:....::||.::||:..:.|.||.:||.....||:|:
Zfish  2564 IMSTVRSCPKSEIETQPPKSWIMKRLGFITDPHQVNVGITRAQEGLCIIGNENLLRCSSLWRKLL 2628

  Fly  1146 LF-----CVKNNA 1153
            ..     ||.|.|
Zfish  2629 NHYQEKGCVVNPA 2641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armiNP_001014556.1 AAA_11 698..902 CDD:289831 63/256 (25%)
AAA_19 720..768 CDD:289986 21/69 (30%)
DNA2 <840..1155 CDD:224037 94/344 (27%)
UvrD_C_2 909..1132 CDD:304668 59/239 (25%)
helz2aXP_003198895.2 AAA_11 614..807 CDD:289831
P-loop_NTPase 639..>683 CDD:304359
DNA2 <741..1055 CDD:224037
UvrD_C_2 817..1017 CDD:304668
RNB 1338..1698 CDD:214935 2/2 (100%)
AAA_11 2168..2405 CDD:289831 62/255 (24%)
AAA_19 2176..2246 CDD:289986 25/74 (34%)
P-loop_NTPase <2366..2438 CDD:304359 30/93 (32%)
AAA_12 2414..2614 CDD:289832 58/238 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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