DRSC/TRiP Functional Genomics Resources

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Protein Alignment armi and Helz2

DIOPT Version :9

Sequence 1:NP_001014556.1 Gene:armi / 38427 FlyBaseID:FBgn0041164 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001292205.1 Gene:Helz2 / 296474 RGDID:1306056 Length:2944 Species:Rattus norvegicus


Alignment Length:693 Identity:157/693 - (22%)
Similarity:266/693 - (38%) Gaps:144/693 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   541 EEIECFVNFRNYDRDRAHFLRDGEFLTLQIENLAERRPSLVIGDTLRVINPWSDPDSQTTKSYEG 605
            :::..|::....::.....||.....|:::  |:::.|.|...:.:|.:           |:...
  Rat  2299 KQVHFFIHHMTMEKVPEEVLRPSTRFTVEV--LSKQLPDLRKEEAVRGL-----------KNASP 2350

  Fly   606 IIHKVLFDRILLKFHSSFQEKYNGEDYRLEFYFSRYSFRKQHHAIS----KIVG----VMGEDFL 662
            ::..:.....:|:.|....|.      |.:..:.|:......|.||    .:.|    |.|....
  Rat  2351 LVISIALGLPILEPHWPIPEP------RHQISWPRHQISWPRHPISGPCLPVSGLCLPVSGLCHP 2409

  Fly   663 FPSKVTKRENPQLDVYMKDDDMYLYDSKLEWYN-----QSLNSIQKRAVFNILRGEAENIPYVLF 722
            .|....:...||..........:|   :.:.||     ..||..|.:||.:.|:.:..    |:.
  Rat  2410 IPEPCRRGWPPQHSSRKVPTSRFL---ERKNYNIPGGHHKLNQSQDKAVRSALQKQFT----VIQ 2467

  Fly   723 GPPGSGKTMTLIETLLQLVRN----------------LPGARILVGTPSNSSADL---------- 761
            ||||:|||:.....:....|:                |.|..:|...|||.|.|:          
  Rat  2468 GPPGTGKTVVGFHIVYWFHRSNQEQMPTGSSPSEEEKLGGPCVLYCGPSNKSVDVLGGLLLRKKT 2532

  Fly   762 ---------------------VTKRLIDSKALLQG---DFIRLVSYNQVEKDLIPP---EIMSYC 799
                                 |:.|.:..|...:|   ..:|.::.:...:....|   ||..:.
  Rat  2533 EMRPLRVYGEQAEATEFPLPGVSNRSLFGKISQEGRPNQSLRSITLHHRIRQAPNPYAAEIRKFD 2597

  Fly   800 ATSDVGAVGSCEDKMMVTESGLKLRCQAKF-IGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDE 863
            |....|.:.|.:|.::......|.|   |: :..|.:.:.||:...:.   ...|.:...:|.||
  Rat  2598 AQLREGKIFSKDDLLVYRRVLGKAR---KYELERHSVILCTCSCAASG---SLKALNVRQILIDE 2656

  Fly   864 AGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQ 928
            ||..|||||::|:|..: |..:|||.||.:||:.:|.:.....:|...|..||      |.:|  
  Rat  2657 AGMATEPETLIPLVCFS-KTEKVVLLGDHKQLRPVVKNEQLRNLGMDRSLFER------YHRD-- 2712

  Fly   929 RFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRL--LSKLRC--VF 989
                        ...|...||....|.|..|..||..:| ...|:.....|.|  :.|..|  :|
  Rat  2713 ------------AIMLDTQYRMHKDICSFPSMEFYGGKL-KTWSDLKRPPSLLGHVGKQSCPVIF 2764

  Fly   990 ESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREV--FLMTIALYRANVTADQIGIITPYQ 1052
            .|.:...|.       ::....:.|:: |..||:||.||  .:..:.|.| .|....:.::|||.
  Rat  2765 GSVQGYEQK-------LLVSTEEGNEN-SRANPEEVTEVVRIIKQLTLDR-TVDPKDVAVLTPYN 2820

  Fly  1053 KQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFS-------LGFVR 1110
            .|...:....:...|....:.|:.:.||.|...:::||||:... ..||.|.:       ||||.
  Rat  2821 AQAAAISRGLMQRGVTGVTVTSITKSQGSEWRYVIVSTVRTCPR-SDMDQRPTKSWLKKFLGFVV 2884

  Fly  1111 CSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLILFCVKNNA 1153
            ...::|||::||:..:.|.|:..||.....|.:|:.||...|:
  Rat  2885 DPHQVNVAITRAQEGLCIIGDHLLLRCCPLWHRLLGFCEAQNS 2927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armiNP_001014556.1 AAA_11 698..902 CDD:289831 63/257 (25%)
AAA_19 720..768 CDD:289986 19/94 (20%)
DNA2 <840..1155 CDD:224037 91/327 (28%)
UvrD_C_2 909..1132 CDD:304668 60/235 (26%)
Helz2NP_001292205.1 DEAD-like_helicase_N 759..989 CDD:421690
AAA_12 961..1160 CDD:404073
RNB 1565..1923 CDD:214935
DEXXc_HELZ2-C 2446..2721 CDD:350798 70/305 (23%)
AAA_12 2701..2906 CDD:404073 60/235 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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