DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment armi and setx

DIOPT Version :9

Sequence 1:NP_001014556.1 Gene:armi / 38427 FlyBaseID:FBgn0041164 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_002936221.1 Gene:setx / 100145435 XenbaseID:XB-GENE-966858 Length:2535 Species:Xenopus tropicalis


Alignment Length:1201 Identity:250/1201 - (20%)
Similarity:427/1201 - (35%) Gaps:383/1201 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 TFTTGEAMRVVKVKSILEHSWEDTSQKEIEKAVDNL-----KNEKPTFFNTETRSVLGLISQRLA 180
            |...||    :.:.|.||.|.....:|.:..|.||.     .|||                    
 Frog  1344 TAQNGE----ISLNSKLEKSSSHVLEKLVTSADDNAFVLPPTNEK-------------------- 1384

  Fly   181 SSIDVETEYGQLTVELDNIEMNFIPTNGDRVRLECNIQLDDG----FVDKQGEILEVTKLFPTRI 241
            .|.:.|.:|.....:.|.::|....      ::|.:|.||:|    ..|..|...|:.|      
 Frog  1385 ESNNYEDDYDLFLTQADPVDMEMCS------QVEYDIDLDEGGASRVSDFSGSDAELPK------ 1437

  Fly   242 QEGEKCIVERVYVHMVVLGPETYILKTDLPTGTDLHLGDIVLADLI-ECQYSKFTRRAIKIT--- 302
                                        |.||:...|..:.|.|.: :|:|:..| ..:|:.   
 Frog  1438 ----------------------------LATGSGTELPKMGLNDGVPKCKYTNCT-EMVKVAGDH 1473

  Fly   303 -----PLEKNFGATKLTQQSSMGSSGSGKAVTVTGVNRFITAELWQKESVSLKLTNNLNRTLRLE 362
                 |.||       .........|...:|:.....:...:   ...|.:..||.:|....|.:
 Frog  1474 CPKHMPPEK-------ADDHLFAKPGLPPSVSKPSTTKVFAS---SNTSRTASLTKDLENFPRPQ 1528

  Fly   363 SI-------------------TVCNDSESQLSVVSPL--ESKEISSGSEITVTFEIHTQFLGEAI 406
            .|                   ||.|.:....||:.||  :|...|..|                 
 Frog  1529 GILKAKPQSAKAPVPKLPKPLTVQNRASDTNSVLQPLINQSNVPSKPS----------------- 1576

  Fly   407 EKYVLNFDLLKVRRVFTVIVCKTKEEVAEAEK-RMIAAEALMAPGRNSQERSRFYANQVWCNKVD 470
                                   ...|:||.| |..||:      :..|:|     :|.|..:  
 Frog  1577 -----------------------YSAVSEAGKLRPYAAQ------KPLQQR-----DQGWLMR-- 1605

  Fly   471 VIPGQQIVTKRRFVALRLGCFEVPKELRQICLTSERRQEMIKAIEQHYSFLTEPLSIKTYMHRFR 535
                 :::..:..:...:..|..|..|.|:.|                  |..|:...:|...|.
 Frog  1606 -----ELLQWKFEMFDNVSRFGPPSNLCQLPL------------------LKVPIKFSSYEEYFN 1647

  Fly   536 L---LLHLEEIE-----------------CFVNFRNYDRD----RAHF---LRDGEFLTLQIENL 573
            :   |:.|...|                 |.::.:|:..|    |..|   .||.: |.:|    
 Frog  1648 VFFPLMLLNTFESLAQEWSVKQKAIHTDLCKLHLQNFCPDGLVNRGEFQVWFRDAD-LCMQ---- 1707

  Fly   574 AERRPSLVIGDTLRVINPWSDPDSQTTKSYEGIIH--KVLFDRILLKFHSSF------QEKYNGE 630
              |.|.  ..|.:.:..|.|.|   :....|.:.|  :|.....:.:|:.|.      :|:|...
 Frog  1708 --RHPK--EDDLVFLCMPESTP---SLSGEEMVSHGARVYHTGYVSRFNRSHRTQSQEKEQYTLC 1765

  Fly   631 DYRLEFYFSRYSFRKQHHAISKIVGVMGEDFLFPSKVTKRENP---------QLDVYMKDD---D 683
            |..:....:..:||.|....:.|..::.....|.:.:..:.||         ..|...:|:   :
 Frog  1766 DLCIHTQGNLSAFRNQQVRCAVIGSLITTQRQFRALLQLQRNPLFRPIILPNPADFIPRDNAASE 1830

  Fly   684 MYLYDSKLEWYNQSLNSIQKRAVFNILRGEAENIPYV--LFGPPGSGKTMTLIETLLQL------ 740
            ...:.|..|:.:....:|:|  .::::: :...:|.:  :.||||:||:.|::..|.::      
 Frog  1831 SSSFPSLKEYNSDQRYAIEK--AYSMVK-QHPRLPRICLIHGPPGTGKSKTIVGLLYRILMENGS 1892

  Fly   741 ----VRNLPGA----RILVGTPSNSSA-DLVTKRLIDSKALLQ---------GD--FIRLVSYNQ 785
                |:||...    |:||..|||::. ||:.|.:::.|....         ||  .:||.:...
 Frog  1893 STVPVQNLSAKNKRNRVLVCAPSNAALDDLMKKIILEFKEKCHNKNTPLGNCGDINLVRLGAEKT 1957

  Fly   786 VEKDLIP-----------------------PEIM------------------SYCATSDVGAVGS 809
            :..|::.                       .|::                  :.||..|......
 Frog  1958 ISSDVVKFSLDCQVNHRITRAQQDQELHKRKELLDRRLDELSRRRALEKCNKNTCAPLDEEIARL 2022

  Fly   810 CEDKMMVTESGLKL------RCQAKFIGTHRITISTCTTLGN------FLQLGFPAGHFTHVLFD 862
            .:::.::.:| |||      ..|...|....:...|.:|.|.      |.|||  ...|:.|:.|
 Frog  2023 SKERQLLADS-LKLVRRRPQELQRTIILESHVICCTLSTSGGILLESAFRQLG--QEPFSCVIVD 2084

  Fly   863 EAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDL 927
            ||||..|.|.::|   |..:.|::||.|||.||...|.|..|.::|:..|.:.|:..        
 Frog  2085 EAGQSCEVENLIP---LLHRCSKLVLVGDPEQLPPTVISMKAEELGYGQSLMSRMCS-------- 2138

  Fly   928 QRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESE 992
              |.:|:|....|| .|...||..|.|....|..||...|         :..|...::||    .
 Frog  2139 --FLDSTGTKSPVL-HLTVQYRMHPDICLFPSHYFYKRML---------KTDRATEEVRC----S 2187

  Fly   993 KDIP-QAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRA---NVTADQIGIITPYQK 1053
            .|.| |.:..|   .:.:..:..:..|:.||||:: |.:..|.|.::   ......||:||||:.
 Frog  2188 SDWPFQPYMVF---DVADGFEQKERESFCNPQEIK-VAVALIKLIKSRKKEFCFRNIGVITPYRA 2248

  Fly  1054 Q----VKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKR 1114
            |    ::.||..| |.|:...::.:|:.|||:::|.|:::.||::      ..:..:||:...:|
 Frog  2249 QKMRIIEELRRAF-GNDIRPGEVDTVDGFQGRQKDCIIVTCVRAN------STQGGIGFLASRQR 2306

  Fly  1115 LNVAVSRARAMMIIFGNPHLLAVDECWRQLI 1145
            |||.::||:..:.|.|:...|..::.|..||
 Frog  2307 LNVTITRAKFSLFILGSLRTLMENKDWNHLI 2337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armiNP_001014556.1 AAA_11 698..902 CDD:289831 66/284 (23%)
AAA_19 720..768 CDD:289986 20/64 (31%)
DNA2 <840..1155 CDD:224037 94/320 (29%)
UvrD_C_2 909..1132 CDD:304668 61/230 (27%)
setxXP_002936221.1 DEXXQc_SETX 1840..2157 CDD:350800 77/336 (23%)
AAA_12 2128..2323 CDD:404073 60/229 (26%)
PHA03247 <2365..2534 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D148890at33208
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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