DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ids and Sgsh

DIOPT Version :9

Sequence 1:NP_647814.1 Gene:Ids / 38423 FlyBaseID:FBgn0035445 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster


Alignment Length:555 Identity:126/555 - (22%)
Similarity:212/555 - (38%) Gaps:157/555 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLLDAAAPPRRPNVVMVIFDDLRPVIGAYGDTLASTPYLDNFARGSHIFTRVYSQQSLCAPSRNS 78
            ::...:|.|:  ||::::.||.....|||.:....||.||..|:...:|...::..|.|:|||:.
  Fly    12 LIAGCSAGPQ--NVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQ 74

  Fly    79 LLTGRRPDTLHLYDFYSYWRTF-----TGNFTTLPQYFKEHGYYTYSCGKVF-------HPGLSS 131
            ||||:...:..:|..:.....|     ||   :||...::.     |.|::.       |.|.::
  Fly    75 LLTGQAGHSSGMYGLHQGVHNFNVLPDTG---SLPNLIRDQ-----SGGRILSGIIGKKHVGAAN 131

  Fly   132 NNTDDYPLSWSAPAFRPRTEQFMNSPVCPDKEGILRKNLICPVELQTQPYKTLPDIESVAEALRF 196
            |             ||...||                     .|.|....:...:|..:.|..|.
  Fly   132 N-------------FRFDFEQ---------------------TEEQHSINQIGRNITRMKEYARQ 162

  Fly   197 VGSRSRHSQEPFFLAMGFHKP----HINFRFPRQFLSRFNLSQ------------FYNYTEDSLK 245
            ...:::..::||||.:|||.|    ||..:| .:|..|:...:            :|::     :
  Fly   163 FLKQAKDEKKPFFLMVGFHDPHRCGHITPQF-GEFCERWGSGEEGMGSIPDWKPIYYDW-----R 221

  Fly   246 PPDMPAVAWNPYTDVRARDDFKHSNISFPYGPISPLQAAQIRQSYYASVSYVDDLFGKLIGGLD- 309
            ..|:|  ||.|.||| .|.:.                |||     |.::|.:|...|.::..|: 
  Fly   222 NLDVP--AWLPDTDV-VRQEL----------------AAQ-----YMTISRLDQGVGLMLKELEA 262

  Fly   310 ---LDETVVVALGDHG-------WSLGEHAEWAKYSNFEVALRVPLIIRSPQFPVAQTKYYHGIT 364
               .|:|:|:...|:|       .:|.||           .:|.||||.||.......:....:.
  Fly   263 AGVADQTLVIYTSDNGPPFPGGRTNLYEH-----------GIRSPLIISSPNKEDRHHEATAAMV 316

  Fly   365 ELLDVFPTLVD-----------LAG---LPKLDKCQSSQELTCGEGKSLYHQL-----MGLGRAD 410
            .|||::|:::|           :.|   ||.|.:....:|.....|...||::     |.:.|..
  Fly   317 SLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMAYPMRMVRNR 381

  Fly   411 EHVALSQYPRPGMLPTKHPNSDKPKLRNIKIMGYSLRTDIYRYTM-WVRFHAQNFSR-DWHDVYG 473
            .:..:.........|........|..:.|      |...:.:.|: |.|...|.:.| :|     
  Fly   382 RYKLIHNINYWADFPIDQDFYTSPTFQQI------LNATLRKQTLPWYRSLLQYYQRPEW----- 435

  Fly   474 EELYDHRLDSGEELNLMPLPQFDDVRQRLRRRLME 508
             ||||.:.|..|..||....:::...::||.:|.:
  Fly   436 -ELYDIKTDPLERFNLADKAKYNGTLKQLREQLFD 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IdsNP_647814.1 AslA 21..509 CDD:225661 125/548 (23%)
iduronate-2-sulfatase 24..495 CDD:293754 121/530 (23%)
SgshNP_650760.1 AslA 17..476 CDD:225661 126/550 (23%)
SGSH 22..471 CDD:293751 124/543 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466511
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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