DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ids and Arsb

DIOPT Version :9

Sequence 1:NP_647814.1 Gene:Ids / 38423 FlyBaseID:FBgn0035445 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_254278.1 Gene:Arsb / 25227 RGDID:2158 Length:528 Species:Rattus norvegicus


Alignment Length:504 Identity:116/504 - (23%)
Similarity:179/504 - (35%) Gaps:146/504 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLLSLMMPVLLDAAAPPRRPNVVMVIFDDLR-PVIGAYGDTLASTPYLDNFARGSHIFTRVYSQQ 69
            |||.|:.|.....||||  |:||.|:.|||. ..:|.:|..: .||:||..|.|..:....| .|
  Rat    23 LLLLLLWPARASDAAPP--PHVVFVLADDLGWNDLGFHGSVI-RTPHLDALAAGGVVLDNYY-VQ 83

  Fly    70 SLCAPSRNSLLTGR---------------RPDTLHLYDFYSYWRTFTGNFTTLPQYFKEHGYYTY 119
            .||.|||:.|||||               :|:.:.|.:            ..|||..|:.||.|:
  Rat    84 PLCTPSRSQLLTGRYQIHMGLQHYLIMTCQPNCVPLDE------------KLLPQLLKDAGYATH 136

  Fly   120 SCGKVFHPGL-------SSNNTDDYPLSWSAPAFRPRTEQFMNSPVCPDKEGILRKNLICPVELQ 177
            ..|| :|.|:       :....|.|      ..:...:|.:.....|...|.:  ....|.::|:
  Rat   137 MVGK-WHLGMYRKECLPTRRGFDTY------FGYLLGSEDYYTHEACAPIECL--NGTRCALDLR 192

  Fly   178 --TQPYKTLPDIES----VAEALRFVGSRSRHSQEPFFLAMGFHKPHINFRFPRQFLSRFNLSQF 236
              .:|.|...||.|    ...|...:.:..  .::|.||.:.|...|...:.|.:::      :.
  Rat   193 DGEEPAKEYTDIYSTNIFTKRATTLIANHP--PEKPLFLYLAFQSVHDPLQVPEEYM------EP 249

  Fly   237 YNYTEDSLKPPDMPAVAWNPYTDVRARDDFKHSNISFPYGPISPLQAAQIRQSYYASVSYVDDLF 301
            |::.:|                        ||                  |:.|...||.:|:..
  Rat   250 YDFIQD------------------------KH------------------RRIYAGMVSLLDEAV 272

  Fly   302 GKLIGGLD----LDETVVVALGDHG---------WSLGEHAEWAKYSNFEVALRVPLIIRSP--- 350
            |.:...|.    .:.||::...|:|         |.|    ...|.:.:|..:|....:.||   
  Rat   273 GNVTKALKSRGLWNNTVLIFSTDNGGQTRSGGNNWPL----RGRKGTLWEGGIRGAGFVASPLLK 333

  Fly   351 QFPVAQTKYYHGITELLDVFPTLVDLA-----GLPKLDKCQSSQELTCGEGKSLYHQLMGLGRAD 410
            |..|...:..|    :.|..||||:||     |...||.....:.::.|........|:.:    
  Rat   334 QKGVKSRELMH----ITDWLPTLVNLAGGSTHGTKPLDGFDVWETISEGSPSPRVELLLNI---- 390

  Fly   411 EHVALSQYPRPGMLPTKHPNSDKPKLRNIKIMGYSLRTDIY---RYTMW 456
            :.......|.||...|...|...|      :...:..|.|:   ||..|
  Rat   391 DPDFFDGLPCPGKNTTPEKNDSFP------LEHSAFNTSIHAGIRYKNW 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IdsNP_647814.1 AslA 21..509 CDD:225661 109/489 (22%)
iduronate-2-sulfatase 24..495 CDD:293754 107/486 (22%)
ArsbNP_254278.1 AslA 36..484 CDD:225661 111/491 (23%)
4-S 40..483 CDD:293753 107/485 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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