DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ids and galns

DIOPT Version :9

Sequence 1:NP_647814.1 Gene:Ids / 38423 FlyBaseID:FBgn0035445 Length:512 Species:Drosophila melanogaster
Sequence 2:XP_002933701.2 Gene:galns / 100485376 XenbaseID:XB-GENE-1000591 Length:520 Species:Xenopus tropicalis


Alignment Length:516 Identity:118/516 - (22%)
Similarity:182/516 - (35%) Gaps:164/516 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLLSLMMPVLLDAAAPPRRPNVVMVIFDDLR-PVIGAYGDTLASTPYLDNFARGSHIFTRVYSQQ 69
            |.|..:.|||:.......|||:::::.||:. ..:|.:|:....||.||..|....:|...|:..
 Frog     9 LALGFLNPVLVLGGMNGTRPNILLLLMDDMGWGDLGVFGEPSRETPNLDKMASEGMLFPNFYTAN 73

  Fly    70 SLCAPSRNSLLTGRRPDTLHLYDFYSYWRT----------FTGNFTTLPQYFKEHGYYTYSCGKV 124
            .||:|||.:|||||.|.....|...|:.|.          ...:....|:..|:.||.....|| 
 Frog    74 PLCSPSRAALLTGRLPIRNGFYTTNSHARNAYTPQEIMGGIPDSEVLFPELLKKAGYVNKIIGK- 137

  Fly   125 FHPGLSSNNTDDYPL-----SW-SAP--AFRP-RTEQFMNSPVCPDKEGILR------------- 167
            :|.|   :....:||     .| .:|  .|.| ..:|..|.||..|.:.:.|             
 Frog   138 WHLG---HRPSYHPLRRGFDEWFGSPNCHFGPYDNKQRPNIPVYRDWDMVGRYYEDFNIDHKTGE 199

  Fly   168 KNLICPVELQTQPYKTLPDIESVAEALRFVGSRSRHSQEPFFLAMGFHKPHINFRFPRQFLSRFN 232
            .||       ||.|        :.|||.|: :|....|:||||.......|              
 Frog   200 SNL-------TQIY--------LQEALEFI-NRQAGDQQPFFLYWSIDATH-------------- 234

  Fly   233 LSQFYNYTEDSLKPPDMPAVAWNPYTDVRARDDFKHSNISFPYGPISPLQAAQIRQSYYASVSYV 297
                            .|..|..|:.....|.                        .|..:|..:
 Frog   235 ----------------APVYASRPFLGTSRRG------------------------LYGDAVREI 259

  Fly   298 DDLFGKLIGGLD----LDETVVVALGDHGWSL-------GEHAEW--AKYSNFEVALRVPLIIRS 349
            |...||::|.|:    :.:|.|....|:|.:|       |.:..:  .|.:.||..:|||.|...
 Frog   260 DFSIGKILGLLNQKDIIKDTFVFFTSDNGAALISAPMQGGSNGPFLCGKQTTFEGGMRVPGIAWW 324

  Fly   350 PQFPVAQTKYYHGITELLDVFPTLVDLAG--LPKLDKCQSSQELTCGEGKSLYHQLMGLGRADEH 412
            |.. ||..:..:.:..::|:|.|.:.|||  :||                         .||.:.
 Frog   325 PGH-VAPGQVSYQLGSIMDLFTTSLSLAGVEIPK-------------------------DRAIDG 363

  Fly   413 VALSQYPRPGMLPTKHPNSDKP--KLRNIKIMGYSLRTDIYRYTMWVRFHAQNFSRDWHDV 471
            :.||    |.:|.::  .:::|  ..|..::|...|......|..|        |..|.::
 Frog   364 IDLS----PVILESE--ETERPIFYYRGNELMAVRLGQHKAHYWTW--------SNSWEEL 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IdsNP_647814.1 AslA 21..509 CDD:225661 113/501 (23%)
iduronate-2-sulfatase 24..495 CDD:293754 113/498 (23%)
galnsXP_002933701.2 GALNS 27..492 CDD:293776 113/498 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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