DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12010 and AT4G04180

DIOPT Version :10

Sequence 1:NP_728878.1 Gene:CG12010 / 38421 FlyBaseID:FBgn0035443 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001319863.1 Gene:AT4G04180 / 825733 AraportID:AT4G04180 Length:600 Species:Arabidopsis thaliana


Alignment Length:463 Identity:115/463 - (24%)
Similarity:198/463 - (42%) Gaps:124/463 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   358 NMPSEGQRRQL---VEHLCEVHEL--NISQTLLEHIARNTQGYVIADLTL-----------LLRR 406
            |:...||:..|   |...|||.:|  ||...|...::..|.|   :|:.|           .||.
plant   148 NVAVRGQKITLKFQVPSTCEVAQLISNIGSQLGVKVSDRTGG---SDMLLRAWDNPVAWQITLRS 209

  Fly   407 VQQQ---------------------LLTKDDFDIEHI------------FLKSL-------SQTQ 431
            |:.:                     |||.|..::|.|            |:.:|       .|.:
plant   210 VENKKKLGESEDDSDDDLCILIFGSLLTSDKVEVEFIKKGSLTTEELEAFVSALGVAGTKAGQNK 274

  Fly   432 PSASR------STDVRVSKMTA--------------------GFEVIGGMEALKRTLQVSVLAGI 470
            .|.||      |||..:|::.:                    .::.|.|.:..||.::.::|..:
plant   275 GSGSRGSTRDSSTDKSISQLESMGVRIYGVNKPLGDDSMDEISWDNIAGYDQQKREIEDTILMAL 339

  Fly   471 RQSAAF--------ARFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGC 527
            .....:        ::|..:.|:.||..||||..||:.|:.:|.:|.:..:......|.|.|.|.
plant   340 HSPEVYDDIVRGTRSKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGE 404

  Fly   528 AERFISRIFDTARKNAP--CLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGS 590
            :||.:..:|..|.: .|  .:|||||||:.    .:|......:...|:||.||.:::|.   ..
plant   405 SERLLGAVFSQANE-LPDGAIIFLDEIDAF----AISRDSEMHEATRRVLSVLLRQIDGF---EQ 461

  Fly   591 QQHILVVAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSRLALLKLHSQRMPFHENVFLQEIAAR 655
            ::.::|:|||||...:|.||:  .|||.:|....||.::|..::..:::::...|   |.::|..
plant   462 EKKVVVIAATNRKQDLDPALI--SRFDSMIMFDLPDLQTRQEIIAQYAKQLSKPE---LVQLAQA 521

  Fly   656 TDRYSGADLCNLCNEA----AIEAFQR------DFKATEIELQDF-EKVLTKQKS--SLTQSQID 707
            |:..||.|:.::|..|    |.:..:|      :.|.|...:|:: |....::||  |:|:.:  
plant   522 TEAMSGRDIRDVCQGAERTWASKLIRRAKAGGEEQKITLPPIQEYLESAEARRKSLRSVTEQK-- 584

  Fly   708 GYYKFAYR 715
             ..|||.|
plant   585 -EQKFAAR 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12010NP_728878.1 CDC48 <220..713 CDD:273521 112/459 (24%)
AT4G04180NP_001319863.1 RPT1 <315..537 CDD:440835 65/234 (28%)

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