Protein Alignment CG12010 and CDC48

DIOPT Version :10

• Sequence 1: NP_728878.1
• Gene: CG12010 / 38421
• FlyBaseID: FBgn0035443
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: NP_187595.1
• Gene: CDC48 / 820142
• AraportID: AT3G09840
• Length: 809
• Species: Arabidopsis thaliana
• Alignment Length: 634
• Identity: 197/634 - (31%)
• Similarity: 310/634 - (48%)
• Gaps: 90/634 - (14%)

  Fly   143 LVQLGIASVEIFDAPGVADDECFEIAHDAELLLADIRLGMPFS------LDFIFKYLPHSFERPM 201
            ||:.|:.||| |........|...:|.|.|:...    |.|..      ||.:.........:.|
plant   157 LVRGGMRSVE-FKVIETDPAEYCVVAPDTEIFCE----GEPVKREDEERLDDVGYDDVGGVRKQM 216

  Fly   202 EQLEKLLETSKISFSH---------RFPTTALVVGPVDCGKSGLLSEFLRRHSCNCFYITASQVL 257
            .|:.:|:|   :...|         :.|...|:.||...||:.:............|.|...:::
plant   217 AQIRELVE---LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 278

  Fly   258 RSYPGETEEELRRIFQAAQTFKEKLRPLLPIVILIEDLELLCPSTAVADAKNSSNSLRISAELYK 322
            ....||:|..||:.|:.|:       ...|.:|.|::::.:.|.   .:..|.....||.::|..
plant   279 SKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPK---REKTNGEVERRIVSQLLT 333

  Fly   323 LLDALP--RGIICLATSGVPDSLHEHARR--RFVREVTINMPSEGQRRQLVEHLCEVHELNI--- 380
            |:|.|.  ..:|.:..:..|:|:....||  ||.||:.|.:|.|..|.:::    .:|..|:
plant   334 LMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVL----RIHTKNMKLA 394

  Fly   381 SQTLLEHIARNTQGYVIADLTLL-----LRRVQQQL----LTKDDFDIEHI---------FLKSL 427
            ....||.|:::|.|||.|||..|     |:.:::::    |..|..|.|.:         |..:|
plant   395 EDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTAL 459

  Fly   428 SQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYGP 492
            ..:.|||.|.|.|.|..::  :..|||:|.:||.||.:|...:.....|.:||:|..||||.|||
plant   460 GNSNPSALRETVVEVPNVS--WNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 522

  Fly   493 PGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVG 557
            |||.||.:||.:|.|....||:....|:.:.:.|.:|..:..|||.||::|||::|.||:||:..
plant   523 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 587

  Fly   558 RRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIHV 622
            :|...|||.||....|:|:.|||||:|:   .:::.:.::.||||||:||.|||||||.|:||::
plant   588 QRGGGSGGDGGGAADRVLNQLLTEMDGM---NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYI 649

  Fly   623 PAPDEKSRLALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLCNEA---AI----------- 673
            |.|||.|||.:.|...::.|..::|.:..:|..|..:||||:..:|..|   ||
plant   650 PLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKE 714

  Fly   674 -------EAFQRD--FKATEIELQDFEKVLTKQKSSLTQSQIDGYYKFA 713
                   ||.:.|  .:.:||:...||:.:...:.|::.:.|..|..||
plant   715 KRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFA 763

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12010	NP_728878.1	CDC48	<220..713	CDD:273521	175/540 (32%)
CDC48	NP_187595.1	CDC48	29..768	CDD:273521	197/634 (31%)