DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12010 and CDC48B

DIOPT Version :9

Sequence 1:NP_728878.1 Gene:CG12010 / 38421 FlyBaseID:FBgn0035443 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_178463.1 Gene:CDC48B / 814895 AraportID:AT2G03670 Length:603 Species:Arabidopsis thaliana


Alignment Length:546 Identity:183/546 - (33%)
Similarity:299/546 - (54%) Gaps:59/546 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 ERPMEQLEKLLETSKISFSHRFPTTA-----------LVVGPVDCGKSGLLSEFLRRHSCNCFYI 251
            ||.::.|.:|     |.|..|:|..|           |:.||...||:.|:...::....:...:
plant    28 ERALQALREL-----IIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVL 87

  Fly   252 TASQVLRSYPGETEEELRRIFQAAQT--FKEKLRPLLPIVILIEDLELLCPSTAVADAKNSSNSL 314
            :...|.|::.||:|:.||..|..|.:  ..:|     |.||.|:::::|||.   .||:...: :
plant    88 SPHSVHRAHAGESEKVLREAFAEASSHAVSDK-----PSVIFIDEIDVLCPR---RDARREQD-V 143

  Fly   315 RISAELYKLLD------ALPRGIICLATSGVPDSLHEHARR--RFVREVTINMPSEGQRRQLVEH 371
            ||:::|:.|:|      :.||.::..:|:.| |::....||  ||...|.::.|:|..|.:::: 
plant   144 RIASQLFTLMDSNKPSSSAPRVVVVASTNRV-DAIDPALRRAGRFDALVEVSTPNEEDRLKILQ- 206

  Fly   372 LCEVHELNISQTL-LEHIARNTQGYVIADLTLLLRRV---------QQQLLTKDDFDIEHIFLKS 426
             ....::|:..:: |:.||.:..|||.|||..|.|..         ...:||..||.|      :
plant   207 -LYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKI------A 264

  Fly   427 LSQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYG 491
            .|...||.:|...|.:.|:|  ::.:||::.||:.||.:|...|:.||||.:.|:|..:|:||:|
plant   265 KSVVGPSINRGITVEIPKVT--WDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHG 327

  Fly   492 PPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLV 556
            ||||:|||:||..|..|..:|.:.|.||::|.|||..|..:...|..||..:|.:||.||.|.:.
plant   328 PPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVA 392

  Fly   557 GRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIH 621
            .:|...|......|..|:||||||||:|:   ...:.|||:||||||..||.||:||||||.:::
plant   393 CKRGDESSSNSSTVGERLLSTLLTEMDGL---EEAKGILVLAATNRPYAIDAALMRPGRFDLVLY 454

  Fly   622 VPAPDEKSRLALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLCNEAAIEAFQRDFKATEIE 686
            ||.||.::|..:|::|::.|...::|.|::||..||.::||:|..||.|:...:.:.:..||.:.
plant   455 VPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLRENIAATAVF 519

  Fly   687 LQDFEKVLTKQKSSLTQSQIDGYYKF 712
            .:.|:...:..|.:||..:::.|..|
plant   520 NRHFQTAKSSLKPALTIEEVETYSSF 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12010NP_728878.1 SpoVK 201..707 CDD:223540 179/536 (33%)
AAA 224..357 CDD:278434 40/142 (28%)
AAA 487..623 CDD:278434 64/135 (47%)
CDC48BNP_178463.1 CDC48 <23..551 CDD:273521 183/546 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D194195at2759
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

Return to query results.
Submit another query.