Protein Alignment CG12010 and CDC48B

DIOPT Version :10

• Sequence 1: NP_728878.1
• Gene: CG12010 / 38421
• FlyBaseID: FBgn0035443
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: NP_178463.1
• Gene: CDC48B / 814895
• AraportID: AT2G03670
• Length: 603
• Species: Arabidopsis thaliana
• Alignment Length: 546
• Identity: 183/546 - (33%)
• Similarity: 299/546 - (54%)
• Gaps: 59/546 - (10%)

  Fly   198 ERPMEQLEKLLETSKISFSHRFPTTA-----------LVVGPVDCGKSGLLSEFLRRHSCNCFYI 251
            ||.::.|.:|     |.|..|:|..|           |:.||...||:.|:...::....:...:
plant    28 ERALQALREL-----IIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVL 87

  Fly   252 TASQVLRSYPGETEEELRRIFQAAQT--FKEKLRPLLPIVILIEDLELLCPSTAVADAKNSSNSL 314
            :...|.|::.||:|:.||..|..|.:  ..:|     |.||.|:::::|||.   .||:...: :
plant    88 SPHSVHRAHAGESEKVLREAFAEASSHAVSDK-----PSVIFIDEIDVLCPR---RDARREQD-V 143

  Fly   315 RISAELYKLLD------ALPRGIICLATSGVPDSLHEHARR--RFVREVTINMPSEGQRRQLVEH 371
            ||:::|:.|:|      :.||.::..:|:.| |::....||  ||...|.::.|:|..|.::::
plant   144 RIASQLFTLMDSNKPSSSAPRVVVVASTNRV-DAIDPALRRAGRFDALVEVSTPNEEDRLKILQ- 206

  Fly   372 LCEVHELNISQTL-LEHIARNTQGYVIADLTLLLRRV---------QQQLLTKDDFDIEHIFLKS 426
             ....::|:..:: |:.||.:..|||.|||..|.|..         ...:||..||.|      :
plant   207 -LYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKI------A 264

  Fly   427 LSQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYG 491
            .|...||.:|...|.:.|:|  ::.:||::.||:.||.:|...|:.||||.:.|:|..:|:||:|
plant   265 KSVVGPSINRGITVEIPKVT--WDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHG 327

  Fly   492 PPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLV 556
            ||||:|||:||..|..|..:|.:.|.||::|.|||..|..:...|..||..:|.:||.||.|.:.
plant   328 PPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVA 392

  Fly   557 GRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIH 621
            .:|...|......|..|:||||||||:|:   ...:.|||:||||||..||.||:||||||.:::
plant   393 CKRGDESSSNSSTVGERLLSTLLTEMDGL---EEAKGILVLAATNRPYAIDAALMRPGRFDLVLY 454

  Fly   622 VPAPDEKSRLALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLCNEAAIEAFQRDFKATEIE 686
            ||.||.::|..:|::|::.|...::|.|::||..||.::||:|..||.|:...:.:.:..||.:.
plant   455 VPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLRENIAATAVF 519

  Fly   687 LQDFEKVLTKQKSSLTQSQIDGYYKF 712
            .:.|:...:..|.:||..:::.|..|
plant   520 NRHFQTAKSSLKPALTIEEVETYSSF 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12010	NP_728878.1	CDC48	<220..713	CDD:273521	176/524 (34%)
CDC48B	NP_178463.1	CDC48	<23..551	CDD:273521	183/546 (34%)