DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12010 and vcp

DIOPT Version :10

Sequence 1:NP_728878.1 Gene:CG12010 / 38421 FlyBaseID:FBgn0035443 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001005677.1 Gene:vcp / 448177 XenbaseID:XB-GENE-969573 Length:805 Species:Xenopus tropicalis


Alignment Length:570 Identity:182/570 - (31%)
Similarity:288/570 - (50%) Gaps:79/570 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 EQLEKLLETSKISFSH---------RFPTTALVVGPVDCGKSGLLSEFLRRHSCNCFYITASQVL 257
            :||.::.|..::...|         :.|...|:.||...||:.:............|.|...:::
 Frog   211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275

  Fly   258 RSYPGETEEELRRIFQAAQTFKEKLRPLLPIVILIEDLELLCPSTAVADAKNSSNSLRISAELYK 322
            ....||:|..||:.|:.|:       ...|.:|.|::|:.:.|.   .:..:.....||.::|..
 Frog   276 SKLAGESESNLRKAFEEAE-------KNAPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLT 330

  Fly   323 LLDALPR--GIICLATSGVPDSLHEHARR--RFVREVTINMPSEGQRRQLVEHLCEVHELNI--- 380
            |:|.|.:  .:|.:|.:..|:|:....||  ||.|||.|.:|....|.:::    ::|..|:   
 Frog   331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEIL----QIHTKNMKLS 391

  Fly   381 SQTLLEHIARNTQGYVIADLTLLLRRVQQQLLTK--DDFDIE----------------HIFLKSL 427
            ....||.:|..|.|:|.|||..|......|.:.|  |..|:|                ..|..:|
 Frog   392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456

  Fly   428 SQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYGP 492
            ||:.|||.|.|.|.|.::|  :|.|||:|.:||.||..|...:.....|.:||::..||||.|||
 Frog   457 SQSNPSALRETVVEVPQVT--WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP 519

  Fly   493 PGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVG 557
            |||.||.:||.:|.|....||:....|:.:.:.|.:|..:..|||.||:.|||::|.||:||:..
 Frog   520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584

  Fly   558 RRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIHV 622
            .|..:.|.|||... |:::.:||||:|:   .:::::.::.||||||:||.|:|||||.|:||::
 Frog   585 ARGGNIGDGGGAAD-RVINQILTEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645

  Fly   623 PAPDEKSRLALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLC------------------- 668
            |.||||||:|:||.:.::.|..::|.|..:|..|:.:|||||..:|                   
 Frog   646 PLPDEKSRIAILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRE 710

  Fly   669 -----NEAAIEAFQRDFKATEIELQDFEKVLTKQKSSLTQSQIDGYYKFA 713
                 |.:|:|. :.|....||....||:.:...:.|::.:.|..|..||
 Frog   711 RERQTNPSAMEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12010NP_728878.1 CDC48 <220..713 CDD:273521 176/541 (33%)
vcpNP_001005677.1 CDC48 25..764 CDD:273521 182/570 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..805
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.