Protein Alignment CG12010 and nmd

DIOPT Version :10

• Sequence 1: NP_728878.1
• Gene: CG12010 / 38421
• FlyBaseID: FBgn0035443
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 253
• Identity: 82/253 - (32%)
• Similarity: 131/253 - (51%)
• Gaps: 23/253 - (9%)

  Fly   445 MTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGL-SLPKGVLLYGPPGCAKTTVAKCLAKEA 508
            :|..:..|.|::::.:.|:.||:..|:....|....| ..||||||:|||||.||.:||..||||
  Fly    92 ITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEA 156

  Fly   509 DMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLR 573
            .|.||....|.:...:.|.:::..|.:|..|.:..||:||:|||||.:..|.::.......::.:
  Fly   157 GMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQ 221

  Fly   574 IL---STLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLR--PGRFDKLIHVPAPDEKSRLAL 633
            .:   ..|.|..|..|        :|:.|||||..:|.|::|  |.:|    |:..|.|..|..:
  Fly   222 FMMLWDGLSTNANSTV--------IVMGATNRPQDLDKAIVRRMPAQF----HIGLPSETQRKDI 274

  Fly   634 LKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLCNEAAIEAFQ-----RDFKATEIE 686
            |||..|.....::|.|..::..|:.:||:||..:|..|::...:     ||..||.::
  Fly   275 LKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALD 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12010	NP_728878.1	CDC48	<220..713	CDD:273521	82/253 (32%)
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	60/176 (34%)
		AAA_lid_3	287..323	CDD:465537	9/35 (26%)