Protein Alignment CG12010 and pch2

DIOPT Version :10

• Sequence 1: NP_728878.1
• Gene: CG12010 / 38421
• FlyBaseID: FBgn0035443
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Alignment Length: 240
• Identity: 56/240 - (23%)
• Similarity: 105/240 - (43%)
• Gaps: 49/240 - (20%)

  Fly   487 VLLYGPPGCAKTTVAKCLAKEADM----TFIATSAAEV-----YSPYVGCAERFISRIFDTARK- 541
            :||:||||..||::.|.||::..:    ::..|...|:     :|.:...:.:.::::|:...:
  Fly   169 ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAEL 233

  Fly   542 -----NAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATN 601
                 |..| :.:||::||...|:..|....... :|:::.:||:::.:   .:..::|::|.:|
  Fly   234 VSDPNNLVC-VLIDEVESLAYARSAMSSNEPRDA-MRVVNAVLTQLDSL---KTCPNVLILATSN 293

  Fly   602 RPDMIDDALLRPGRFDKLIHVPAPD-------EKSRLALLK---------LHSQRMPFHENVFLQ 650
            ....||.|.:  .|.|..:.:..|.       .|..||.|.         |.|:..   |...|.
  Fly   294 LAQSIDLAFV--DRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDA---EEGLLT 353

  Fly   651 EIAARTDRYSGADLCNL-----CNEAAIEAFQRDFKATEIELQDF 690
            ::|.|:...||..|..|     ....:...|:.|.|   |.|.||
  Fly   354 QLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQK---ISLSDF 395

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12010	NP_728878.1	CDC48	<220..713	CDD:273521	56/240 (23%)
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	34/149 (23%)