DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12010 and Nvl

DIOPT Version :10

Sequence 1:NP_728878.1 Gene:CG12010 / 38421 FlyBaseID:FBgn0035443 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001099450.1 Gene:Nvl / 289323 RGDID:1311270 Length:855 Species:Rattus norvegicus


Alignment Length:564 Identity:172/564 - (30%)
Similarity:275/564 - (48%) Gaps:102/564 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 PTTALVVGPVDCGKSGLLSEFLRRHSCNCFYITASQVLRSYPGETEEELRRIFQAAQTFKEKLRP 284
            |...|:.||..|||:.|..............:.|.:::....||:|::||.:|..|.:       
  Rat   297 PRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVS------- 354

  Fly   285 LLPIVILIEDLELLCPSTAVADAKNSSNSLRISAELYKLLD-----ALPRGIICLATSGVPDSLH 344
            ..|.::.|::::.:.|...||   :.....||.|:|...:|     |....::.:..:..||||.
  Rat   355 NAPCIVFIDEIDAITPKREVA---SKDMERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSLD 416

  Fly   345 EHARR--RFVREVTINMPSEGQRRQLVEHLCEVHELNISQTL-LEHIARNTQGYVIADL------ 400
            ...||  ||.|||.:.:|.|..|.::::.||  .:|.:.:|. ..|:|..|.|:|.|||      
  Rat   417 PALRRAGRFDREVCLGIPDEASRERILQTLC--RKLRLPETFNFSHLAHLTPGFVGADLMALCRE 479

  Fly   401 -------TLLLRRVQQQ-------------------------------------LLTKDDFDIEH 421
                   .:|:||.:||                                     |..:|....|.
  Rat   480 AAVCAVHRVLMRRQEQQRTEPETGGLPSDGEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQ 544

  Fly   422 I---------FLKSLSQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFA 477
            :         |:.:||:.||||.|...|.|..:|  :..:|.:|.::..|.:::||.:|....|.
  Rat   545 MQGLCLELNDFIVALSEVQPSAKREGFVTVPNVT--WADVGALEDIREELTMAILAPVRNPEQFR 607

  Fly   478 RFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKN 542
            ..||..|.||||.|||||.||.:||.:|.|:.:.||:....|:.:.|||.:||.:.::|..|:.:
  Rat   608 ALGLVAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 672

  Fly   543 APCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMID 607
            |||:||.||:|:|..||:....|    ..:|:::.|||||:|:   .::|.:.::|||||||:||
  Rat   673 APCVIFFDEVDALCPRRSDRETG----ASVRVVNQLLTEMDGL---ETRQQVFILAATNRPDIID 730

  Fly   608 DALLRPGRFDKLIHVPAPDEKSRLALLKL---HSQRMPFHENVFLQEIA--ARTDRYSGADLCNL 667
            .|:|||||.||.:.|..|....|:|:||.   :..:.|..|:|.|:.||  .|.|.|:||||..|
  Rat   731 PAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVDLEAIANDHRCDCYTGADLSAL 795

  Fly   668 CNEAAIEAFQRDFKATE---------IELQDFEKVLTKQKSSLT 702
            ..||::.|.:::....:         :..:.||:...|.|.|::
  Rat   796 VREASLCALRQEITGQKNGIGTAELTVSHKHFEEAFRKVKPSIS 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12010NP_728878.1 CDC48 <220..713 CDD:273521 172/564 (30%)
NvlNP_001099450.1 Nucleolin_bd 2..71 CDD:465247
CDC48 <255..855 CDD:273521 172/564 (30%)
Blue background indicates that the domain is not in the aligned region.

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