Protein Alignment CG12010 and Vcp

DIOPT Version :9

• Sequence 1: NP_728878.1
• Gene: CG12010 / 38421
• FlyBaseID: FBgn0035443
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: NP_446316.1
• Gene: Vcp / 116643
• RGDID: 621595
• Length: 806
• Species: Rattus norvegicus
• Alignment Length: 570
• Identity: 182/570 - (31%)
• Similarity: 289/570 - (50%)
• Gaps: 79/570 - (13%)

  Fly   202 EQLEKLLETSKISFSH---------RFPTTALVVGPVDCGKSGLLSEFLRRHSCNCFYITASQVL 257
            :||.::.|..::...|         :.|...|:.||...||:.:............|.|...:::
  Rat   211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275

  Fly   258 RSYPGETEEELRRIFQAAQTFKEKLRPLLPIVILIEDLELLCPSTAVADAKNSSNSLRISAELYK 322
            ....||:|..||:.|:.|:       ...|.:|.|::|:.:.|.   .:..:.....||.::|..
  Rat   276 SKLAGESESNLRKAFEEAE-------KNAPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLT 330

  Fly   323 LLDALPR--GIICLATSGVPDSLHEHARR--RFVREVTINMPSEGQRRQLVEHLCEVHELNI--- 380
            |:|.|.:  .:|.:|.:..|:|:....||  ||.|||.|.:|....|.:::    ::|..|:
  Rat   331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL----QIHTKNMKLA 391

  Fly   381 SQTLLEHIARNTQGYVIADLTLLLRRVQQQLLTK--DDFDIE----------------HIFLKSL 427
            ....||.:|..|.|:|.|||..|......|.:.|  |..|:|                ..|..:|
  Rat   392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456

  Fly   428 SQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYGP 492
            ||:.|||.|.|.|.|.::|  :|.|||:|.:||.||..|...:.....|.:||::..||||.|||
  Rat   457 SQSNPSALRETVVEVPQVT--WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP 519

  Fly   493 PGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVG 557
            |||.||.:||.:|.|....||:....|:.:.:.|.:|..:..|||.||:.|||::|.||:||:..
  Rat   520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584

  Fly   558 RRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIHV 622
            .|..:.|.|||... |:::.:||||:|:   .:::::.::.||||||:||.|:|||||.|:||::
  Rat   585 ARGGNIGDGGGAAD-RVINQILTEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645

  Fly   623 PAPDEKSRLALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLC------------------- 668
            |.||||||:|:||.:.::.|..::|.|:.:|..|:.:|||||..:|
  Rat   646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710

  Fly   669 -----NEAAIEAFQRDFKATEIELQDFEKVLTKQKSSLTQSQIDGYYKFA 713
                 |.:|:|. :.|....||....||:.:...:.|::.:.|..|..||
  Rat   711 RERQTNPSAMEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12010	NP_728878.1	SpoVK	201..707	CDD:223540	178/562 (32%)
		AAA	224..357	CDD:278434	36/136 (26%)
		AAA	487..623	CDD:278434	60/135 (44%)
Vcp	NP_446316.1	CDC48	25..764	CDD:273521	182/570 (32%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	708..727		4/19 (21%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	768..806
		Interaction with UBXN6. /evidence=ECO:0000250	797..806
		PIM motif. /evidence=ECO:0000250|UniProtKB:P55072	802..806

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D169540at33208
OrthoFinder	1	1.000	-	-		FOG0000137
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.820