DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ythdc1 and ythdf3

DIOPT Version :10

Sequence 1:NP_647811.2 Gene:Ythdc1 / 38420 FlyBaseID:FBgn0027616 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_956164.1 Gene:ythdf3 / 334191 ZFINID:ZDB-GENE-030131-6123 Length:600 Species:Danio rerio


Alignment Length:440 Identity:94/440 - (21%)
Similarity:161/440 - (36%) Gaps:105/440 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SESNGGDSSDSE----PSISSV-----------------STATSSLAG----SSKRKTKKP--AK 85
            ::...|..||::    |.:||:                 .|..|.|.|    ||......|  :.
Zfish   165 ADGQAGFGSDTQLSKVPGLSSIDQGMAGLKLGSDMSAVTKTVGSPLGGTVGMSSMAANSMPPVSS 229

  Fly    86 QSPQPAVETKSSKSSAKNKAKREPTPEELNGG-------KKKKRTDSGTKKTTSSEASDKVKS-- 141
            .:|:|......::..||.:.|.:|.|..:.|.       ..|...:.||.:...|.....:..  
Zfish   230 SAPKPTSWAAIARKPAKPQPKMKPKPNMILGSGVTIPPPPIKHNINIGTWEDKGSITKPPLAQQM 294

  Fly   142 -------------------KSPDTEDRQPSAKKSRTKIPSNA----------NDSAGHKSDLSEA 177
                               :||.....||..::.:.:.|.:.          :...|....|..:
Zfish   295 LPPQQLVQQQLLAQPPPMLQSPLPPQHQPQHQQLQVQSPQHPQHLPPGPPHHHSQPGPPQPLHPS 359

  Fly   178 EDEKPSLPTLESDSESSDSDSGTQHKRNGG-NGGGNGRGKPSSKSSTPEKDSVG------GGTHS 235
            :.:.|    |..:...:..:.||...:|.| :..|.|.|.|  .||:|..:.|.      ...::
Zfish   360 QAQNP----LIQNRWVAPRNRGTMFNQNSGMDNFGLGTGVP--MSSSPSSNEVHPVLEKLKALNN 418

  Fly   236 HSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQAFK--EARNVL- 297
            ::.|.:|:..|      :.|.|:|||.:.|::..|...|:|.:....:..|:.|::  .|:..| 
Zfish   419 YNPKDFDWTLK------NGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAYRSLSAKGPLY 477

  Fly   298 LIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHLHN 362
            |:||||.||.|.|.|.|.:....:.....|      |.....|..|:.||..|::..|...|:..
Zfish   478 LLFSVNGSGHFCGVAEMKSTVDYNAYAGVW------SQDKWKGKFEVKWIFVKDVPNNQLRHIRL 536

  Fly   363 TWNEGKPVKIGRDGQEIEPKIGGELCRLFPEDEQIELTPILKKSKETARV 412
            ..|:.|||...||.||:            |.::..::..|:...|.|..:
Zfish   537 ENNDNKPVTNSRDTQEV------------PLEKAKQVLKIIATFKHTTSI 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ythdc1NP_647811.2 YTH 255..391 CDD:410979 41/138 (30%)
ythdf3NP_956164.1 YTH 432..565 CDD:461195 42/150 (28%)

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