DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ythdc1 and Ythdf1

DIOPT Version :10

Sequence 1:NP_647811.2 Gene:Ythdc1 / 38420 FlyBaseID:FBgn0027616 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_001019927.1 Gene:Ythdf1 / 296467 RGDID:1308932 Length:559 Species:Rattus norvegicus


Alignment Length:415 Identity:98/415 - (23%)
Similarity:159/415 - (38%) Gaps:92/415 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 FEFNTRSEASESNG----------GDSSDSEPSISSVSTATSS------LAGSSKRKTKKP-AKQ 86
            |..:|.::|...|.          ||.:.|  ::.:|.:..:|      |:|:.......| :|.
  Rat   169 FHSDTLNKAPGMNSLEQGMVGLKIGDVTTS--AVKTVGSVVNSVALTGVLSGNGGTNVNMPVSKP 231

  Fly    87 SPQPAVETKSSKSSAKNKAKREPTPEELNGGKK-----KKRTDSGT--KKTTSSEASDKVKSKSP 144
            :...|:.:|.:|...|.|.|..|    :.||..     |...|.||  .|..:.:||...::.||
  Rat   232 TSWAAIASKPAKPQPKMKTKSGP----IVGGTLPPPPIKHNMDIGTWDNKGPAPKASAPQQTPSP 292

  Fly   145 DTEDRQPSAKKSRTKIPSNANDSAGHKSDLSEAEDEKPSL--PTLESDSESSDSDSGTQHKRN-- 205
            ..   .|..::....:|.                 :.|.|  |..:|..:...........||  
  Rat   293 QA---APQPQQVAQPLPV-----------------QPPPLVQPQYQSPQQPLQPRWVAPRNRNAA 337

  Fly   206 -GGNGGGN------GRGKPSSKSST---PEKDSVGGGTHSHSQKGYDYMTKLNYLFRDTRFFLIK 260
             |.:||.|      |..:|:|..|.   |..:.: ...||::.|.:|:..|      ..|.|:||
  Rat   338 FGQSGGANSDSNSVGSAQPTSAPSVESHPVLEKL-KAAHSYNPKEFDWNLK------SGRVFIIK 395

  Fly   261 SNNSDNVQLSKNKSVWATLPQNDANLNQAFKEARN---VLLIFSVNESGKFAGFARMAAPSRRDI 322
            |.:.|::..|...|:|.:....:..|:.||:...:   |.|:||||.||.|.|.|.|.:|.....
  Rat   396 SYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGT 460

  Fly   323 PQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHLHNTWNEGKPVKIGRDGQEIEPKIGGEL 387
            ....|      |.....|..::.||..|::..|...|:....|:.|||...||.||:        
  Rat   461 SAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV-------- 511

  Fly   388 CRLFPEDEQIELTPILKKSKETARV 412
                |.::..::..|:...|.|..:
  Rat   512 ----PLEKAKQVLKIIASYKHTTSI 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ythdc1NP_647811.2 YTH 255..391 CDD:410979 41/138 (30%)
Ythdf1NP_001019927.1 YTH 390..523 CDD:461195 42/150 (28%)

Return to query results.
Submit another query.