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Protein Alignment Ythdc1 and Ythdf1

DIOPT Version :9

Sequence 1:	NP_647811.2	Gene:	Ythdc1 / 38420	FlyBaseID:	FBgn0027616	Length:	721	Species:	Drosophila melanogaster
Sequence 2:	NP_776122.1	Gene:	Ythdf1 / 228994	MGIID:	1917431	Length:	559	Species:	Mus musculus

Alignment Length:	386	Identity:	97/386 - (25%)
Similarity:	147/386 - (38%)	Gaps:	96/386 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly    51 NGGDSSDSEPSISSVSTATSSLAGSSKRKTKKPAKQSPQPAVETKSSKSSAKNKAKREPTPEELN 115
            |||.:.:     ..||..||..|.:|     ||||  |||.::|||.               .:.
Mouse   219 NGGTNVN-----MPVSKPTSWAAIAS-----KPAK--PQPKMKTKSG---------------PIV 256

  Fly   116 GGKK-----KKRTDSGT--KKTTSSEASDKVKSKSPDTEDRQPSAKKSRTKIPSNANDSAGHKSD 173
            ||..     |...|.||  .|..:.:||...::.||..   .|..::....:|.
Mouse   257 GGALPPPPIKHNMDIGTWDNKGPAPKASAPQQTPSPQA---APQPQQVAQPLPV----------- 307

  Fly   174 LSEAEDEKPSL--PTLESDSESSDSDSGTQHKRN---GGNGGGN------GRGKPSSKSST---P 224
                  :.|.|  |..:|..:...........||   |.:||.|      |..:|:|..|.   |
Mouse   308 ------QPPPLVQPQYQSPQQPLQPRWVAPRNRNAAFGQSGGANSDSNSVGNAQPTSAPSVESHP 366

  Fly   225 EKDSVGGGTHSHSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQA 289
            ..:.: ...||::.|.:|:..|      ..|.|:|||.:.|::..|...|:|.:....:..|:.|
Mouse   367 VLEKL-KAAHSYNPKEFDWNLK------SGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGA 424

  Fly   290 FKEARN---VLLIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKE 351
            |:...:   |.|:||||.||.|.|.|.|.:|.........|      |.....|..::.||..|:
Mouse   425 FRSMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKD 483

  Fly   352 LSFNATLHLHNTWNEGKPVKIGRDGQEIEPKIGGELCRLFPEDEQIELTPILKKSKETARV 412
            :..|...|:....|:.|||...||.||:            |.::..::..|:...|.|..:
Mouse   484 VPNNQLRHIRLENNDNKPVTNSRDTQEV------------PLEKAKQVLKIIASYKHTTSI 532

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.