DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strip and strip1

DIOPT Version :10

Sequence 1:NP_647806.2 Gene:Strip / 38412 FlyBaseID:FBgn0035437 Length:927 Species:Drosophila melanogaster
Sequence 2:NP_001027483.1 Gene:strip1 / 613075 XenbaseID:XB-GENE-5768658 Length:819 Species:Xenopus tropicalis


Alignment Length:882 Identity:421/882 - (47%)
Similarity:566/882 - (64%) Gaps:111/882 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 TDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFSEFQMNVKAFEDQMELYDLPPNWQKQD 121
            |...|::...:.|||:|:|||.|.:..|::|||||||..||.:|.|.||:...|:.....|.:.|
 Frog    36 TQRKDSEGYSESPDLEFIYADSDKWAAELSELYSYTEGPEFHLNRKCFEEDFHLHVPDKKWTELD 100

  Fly   122 SASQRGIVMKLVDQLEVSDRSFRMQAARCILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFA 186
            .:.||...|:|:|.|||:.|..|::.||.|||:|||.:.:..|:.|.....|.|:.:|.:.|.|.
 Frog   101 VSQQRAHTMRLLDALEVTAREKRLKVARAILYVAQGTFGDCSSEAEVQIWLRHNIFLLLEAGAFT 165

  Fly   187 SFIDLLNMEIE--SACSPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDYRELA 249
            :.::|||||:|  :|||.   ||:...::|.||||:||:|:::|::.:|:|:|.|..|.:::.:.
 Frog   166 ALVELLNMEVENSAACSN---AVRKPAISLADSTDLRVLLNIMYLMVDTLREEAEGDSPEWKAMR 227

  Fly   250 DSFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLWKVSLLGLGGMDVLKNLKNE 314
            .:|..|:.||..:.|..||.|.||:|:||||.||.||||||:|||||..|..|||.:.|..:|.:
 Frog   228 QTFRTELGSPFYNNEPFAVMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELLEMKAQ 292

  Fly   315 YRLKVGLEPITEDTLEVTKCMRASSPPATATDILENQYPK-RNFKRSLMKQRFLD-----EPEQI 373
            .|..:||.|:.||:::|.:.|||:||||:|:|::|.|..: |...::|:||..||     :|.:.
 Frog   293 KREILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQQRRGRREHKALIKQDNLDAFNERDPYKA 357

  Fly   374 DMEMGGNEGQNNANNGSGNGGNGEEELSQYYRPYDDPSSSASTTSTANPNNQPSLTQPPA---AV 435
            | :...:|.:|:.:|...|            .|:........         .||:|.|||   |.
 Frog   358 D-DSRDDEEENDEDNSLEN------------EPFSIEREEVM---------PPSVTHPPAERLAF 400

  Fly   436 PPVQITARLPWTPKVRQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRHMYMSL 500
            |     ..|||.||||:|||:.||:.||:|||||:|..|..::.|||:||||..:||:.|.|.|:
 Frog   401 P-----KGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIRTLKLHKYTSV 460

  Fly   501 ADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIALLKVLLAASPTSKSKTESIN 565
            |:|||::||:..|.|:|..|:|::..|.|:|||.:||:||||||||||:||||:||||:||:|||
 Frog   461 AEVQIRQEEEFLRCPLSGGEEEVEQVPTEILYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSIN 525

  Fly   566 IMADVLPRKMPLTATQSTKLTVDIGRHKEIIVKAVSAIILLYLKHFKINHVYQFEFMSQHLVFAN 630
            |:|||||.:||.|..||.||.||:.|||||||||:||::||.|||||:||:||.|:|:|||||||
 Frog   526 ILADVLPEEMPTTVLQSMKLGVDVNRHKEIIVKAISAVLLLLLKHFKLNHIYQMEYMAQHLVFAN 590

  Fly   631 CIPLVLKFFNQTITEYVNTKNSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCIN 695
            ||||:||||||.|..|:..||||.:||:|..|:.|.|:|:.:|...|   .:..:.|||:|||||
 Frog   591 CIPLILKFFNQNIMSYITAKNSISVLDYPYSVVHELPELTAESLEAG---DNNRFCWRNLFSCIN 652

  Fly   696 LLRILNKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQTKYLGRQWRKSNMKT 760
            ||||||||.||||||.|||||||||||||:.|||:.||||||||||||:||||||||||||||||
 Frog   653 LLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKT 717

  Fly   761 MSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECTLRACVDRFNLRRYPEATQKCGNNGTAAQNA 825
            |||||.|||||||||||:||||::||||||||||.|||.::|||.||| :.|.|           
 Frog   718 MSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNSRRY-DRTHK----------- 770

  Fly   826 ENAQQSNMMAGNNGCGNNGDANGYGNNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFG 890
                             |.|.                            .|.|..|.    :..|
 Frog   771 -----------------NPDF----------------------------LPVDNCLQ----SVLG 786

  Fly   891 HSGWWDRKVELTDYFKANYAVWLEEEVYNSQTDWDAL 927
                  ::|||.:.|:.||.:|||.||::....|:.|
 Frog   787 ------QRVELPEDFQMNYDLWLEREVFSKPISWEEL 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StripNP_647806.2 N1221 69..347 CDD:429737 124/279 (44%)
DUF3402 482..810 CDD:463384 227/327 (69%)
strip1NP_001027483.1 N1221 48..318 CDD:429737 119/272 (44%)
DUF3402 442..765 CDD:463384 225/325 (69%)

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