DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strip and Strip1

DIOPT Version :9

Sequence 1:NP_647806.2 Gene:Strip / 38412 FlyBaseID:FBgn0035437 Length:927 Species:Drosophila melanogaster
Sequence 2:XP_342312.7 Gene:Strip1 / 362012 RGDID:1564249 Length:868 Species:Rattus norvegicus


Alignment Length:873 Identity:417/873 - (47%)
Similarity:560/873 - (64%) Gaps:101/873 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 DADANCDGPDLDFVYADVDGYQNEIAELYSYTEFSEFQMNVKAFEDQMELYDLPPNWQKQDSASQ 125
            |::...:.|||:|.|||.|.:..|:||||||||..||.||.|.||:...::.....|.:.|:...
  Rat    89 DSEGYSESPDLEFEYADTDKWAAELAELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELDTNQH 153

  Fly   126 RGIVMKLVDQLEVSDRSFRMQAARCILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFID 190
            |...|:|:|.|||:.|..|::.||.|||:|||.:.|..|:.|.....|.|:.:|.::|.|.:.::
  Rat   154 RTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQFWMRYNIFLLLEVGTFNALVE 218

  Fly   191 LLNMEIE--SACSPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDYRELADSFV 253
            ||||||:  :|||.   ||:...::|.||||:||:|:::|:|.||:..:.:....::|.:..:|.
  Rat   219 LLNMEIDNSAACSS---AVRKPAISLADSTDLRVLLNIMYLIVETVHQDCDGDKAEWRTMRQTFR 280

  Fly   254 QEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLWKVSLLGLGGMDVLKNLKNEYRLK 318
            .|:.|||.:.|..|:.|.||:|:||||.||.||||||:|||||..|..|||.:.|:::|.|.|..
  Rat   281 AELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTL 345

  Fly   319 VGLEPITEDTLEVTKCMRASSPPATATDILENQYPK-RNFKRSLMKQRFLDEPEQIDMEMGGNEG 382
            :||.|:.||:::|.:.|||:||||:|:|::|.|..: |...::|:||..||...:.|.....:..
  Rat   346 LGLPPLPEDSIKVIRNMRAASPPASASDLIEQQQKRGRREHKALIKQDNLDAFNERDPYKADDSR 410

  Fly   383 QNNANNGSGNGGNGEEELSQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPV-QITA--RL 444
            :....|...|...||                      |.|..:..:..||...||. ::|.  .|
  Rat   411 EEEEENDDDNSLEGE----------------------AFPLERDEVMPPPLQHPPTDRLTCPKGL 453

  Fly   445 PWTPKVRQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRHMYMSLADVQIKKEE 509
            ||.||||:|||:.||:.||:|||||:|..|.:::.|||:||||..|||::|.|.|:|:||.:.||
  Rat   454 PWAPKVREKDIEMFLESSRSKFIGYTLGSDTDTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEE 518

  Fly   510 DIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIALLKVLLAASPTSKSKTESINIMADVLPRK 574
            :..|:|:|..|:|::..|||.|||.:||:||||||||||:||||:||||:||:||||:|||||.:
  Rat   519 EYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEE 583

  Fly   575 MPLTATQSTKLTVDIGRHKEIIVKAVSAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFF 639
            ||.|..||.||.||:.||||:||||:||::||.|||||:||:||||:|:|||||||||||:||||
  Rat   584 MPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLLLKHFKLNHIYQFEYMAQHLVFANCIPLILKFF 648

  Fly   640 NQTITEYVNTKNSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCINLLRILNKLI 704
            ||.|..|:..||||.:||:|.||:.|.|:|:.:|...|   .:..:.|||:|||||||||||||.
  Rat   649 NQNIMSYITAKNSISVLDYPHCVVNELPELTAESLEAG---DNNQFCWRNLFSCINLLRILNKLT 710

  Fly   705 KWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQTKYLGRQWRKSNMKTMSAIYAKVR 769
            ||||||.|||||||||||||:.|||:.||||||||||||:|||||||||||||||||||||.|||
  Rat   711 KWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVR 775

  Fly   770 HRLNDDWAFGNDLESRPWDFQAEECTLRACVDRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMM 834
            ||||||||:||||::||||||||||.|||.::|||.|||...                       
  Rat   776 HRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRT----------------------- 817

  Fly   835 AGNNGCGNNGDANGYGNNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWWDRKV 899
                                     |:....|         |.|..|.    :..|      ::|
  Rat   818 -------------------------HSNPDFL---------PVDNCLQ----SVLG------QRV 838

  Fly   900 ELTDYFKANYAVWLEEEVYNSQTDWDAL 927
            :|.:.|:.||.:|||.||::....|:.|
  Rat   839 DLPEDFQMNYDLWLEREVFSKPISWEEL 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StripNP_647806.2 N1221 69..344 CDD:285201 124/276 (45%)
DUF3402 482..826 CDD:288715 229/343 (67%)
Strip1XP_342312.7 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353251
Domainoid 1 1.000 248 1.000 Domainoid score I2069
eggNOG 1 0.900 - - E1_KOG3680
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H35064
Inparanoid 1 1.050 819 1.000 Inparanoid score I442
OMA 1 1.010 - - QHG46345
OrthoDB 1 1.010 - - D1095402at2759
OrthoFinder 1 1.000 - - FOG0002394
OrthoInspector 1 1.000 - - otm44919
orthoMCL 1 0.900 - - OOG6_103643
Panther 1 1.100 - - O PTHR13239
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2094
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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