DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12078 and ctdspla

DIOPT Version :10

Sequence 1:NP_647795.2 Gene:CG12078 / 38401 FlyBaseID:FBgn0035426 Length:253 Species:Drosophila melanogaster
Sequence 2:XP_068073219.1 Gene:ctdspla / 751737 ZFINID:ZDB-GENE-060825-333 Length:303 Species:Danio rerio


Alignment Length:218 Identity:58/218 - (26%)
Similarity:103/218 - (47%) Gaps:40/218 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 SPVSKSRLSLVA-----RKTLVLDMDNTMITSWF-----------------------IKRGKKPK 94
            ||.:|..|..|:     :..:|:|:|.|::.|.|                       :||     
Zfish    89 SPPAKYILPEVSINDYGKNCVVIDLDETLVHSSFKPISNADFIVPVEIDGTVHQVYVLKR----- 148

  Fly    95 NIPRIAHDFKFYLPAYGA----TIYVYKRPYLDHFLDRVSKWYDLTVFTSGAEIYASPILDFLDR 155
              |.:......:|.....    .:||.|||::|.||.::.:.::..:||:....||.|:.|.||:
Zfish   149 --PHVDELLFVFLSVIVCLVCLKVYVLKRPHVDEFLQKMGEMFECVLFTASLAKYADPVADLLDQ 211

  Fly   156 GRGILNSRLYRQHCIEQFGKWSKSVLLACPDLSNVVLLDNSSTECSFNAENAILIKSYEIGCRDE 220
            . |:..:||:|:.|:...|.:.|.:.....:|:.|:::|||.....|:.|||:.::|:.....|.
Zfish   212 W-GVFRARLFRESCVFHRGNYVKDLSRLGRELNKVIIVDNSPASYIFHPENAVPVQSWFDDMTDT 275

  Fly   221 ALINLLPFLDALRFMKDVRSMLK 243
            .|::|||..:.|....||.|:|:
Zfish   276 ELLDLLPLFEGLSRETDVYSVLQ 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12078NP_647795.2 HIF-SF_euk 70..237 CDD:274055 49/193 (25%)
ctdsplaXP_068073219.1 HIF-SF_euk 106..292 CDD:274055 49/193 (25%)

Return to query results.
Submit another query.