DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12078 and Ctdspl2

DIOPT Version :10

Sequence 1:NP_647795.2 Gene:CG12078 / 38401 FlyBaseID:FBgn0035426 Length:253 Species:Drosophila melanogaster
Sequence 2:NP_001014070.3 Gene:Ctdspl2 / 311368 RGDID:1309219 Length:465 Species:Rattus norvegicus


Alignment Length:216 Identity:63/216 - (29%)
Similarity:113/216 - (52%) Gaps:18/216 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 WFFLEKVYRVFVEYTPIIYLSEDRLSPVSKSRLSLVARKT----LVLDMDNTMITSWFIKRGKKP 93
            |...:..|  |:::.|  .|:|::|:  .|..|.|..|.|    ||||:|.|::.....:.....
  Rat   251 WEVFDPYY--FIKHVP--PLTEEQLN--RKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAA 309

  Fly    94 KNIPRIAHDFKFYLPAYGATIYVYKRPYLDHFLDRVSKWYDLTVFTSGAEIYASPILDFLDRGRG 158
            ...|.:..|..:       .:||..||:...||:|:|:.|::.:||:..::||..:|:.||..:.
  Rat   310 LTFPVLFQDVIY-------QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQ 367

  Fly   159 ILNSRLYRQHCIEQFGKWSKSVLLACPDLSNVVLLDNSSTECSFNAENAILIKSYEIGCRDEALI 223
            ::..||:|:||:...|.:.|.:.:...|||..:::|||....::...|.|.|:|:.:...|..|:
  Rat   368 LVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELL 432

  Fly   224 NLLPFLDAL-RFMKDVRSMLK 243
            .|:|||:.| ...:|||..::
  Rat   433 KLIPFLEKLVELNEDVRPHIR 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12078NP_647795.2 HIF-SF_euk 70..237 CDD:274055 50/171 (29%)
Ctdspl2NP_001014070.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..133
HIF-SF_euk 286..447 CDD:274055 48/167 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.