DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12078 and ctdspl

DIOPT Version :10

Sequence 1:NP_647795.2 Gene:CG12078 / 38401 FlyBaseID:FBgn0035426 Length:253 Species:Drosophila melanogaster
Sequence 2:XP_031759361.1 Gene:ctdspl / 100487887 XenbaseID:XB-GENE-1013061 Length:276 Species:Xenopus tropicalis


Alignment Length:200 Identity:66/200 - (33%)
Similarity:109/200 - (54%) Gaps:22/200 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 SPVSK-----SRLSLVARKTLVLDMDNTMITSWFIKRGKKPKNIPRIAHDFKFYLPA-YGATI-- 114
            ||.:|     .::|...:|.:|:|:|.|::.|.|     ||.|      :..|.:|. ...||  
 Frog    89 SPPAKYLLPELKVSDYGKKCVVIDLDETLVHSSF-----KPIN------NADFIVPVEIDGTIHQ 142

  Fly   115 -YVYKRPYLDHFLDRVSKWYDLTVFTSGAEIYASPILDFLDRGRGILNSRLYRQHCIEQFGKWSK 178
             ||.|||::|.||.::.:.::..:||:....||.|:.|.|||. |:.|:||:|:.|:...|.:.|
 Frog   143 VYVLKRPHVDEFLQKMGELFECVLFTASLAKYADPVADLLDRW-GVFNARLFRESCVFHRGNYVK 206

  Fly   179 SVLLACPDLSNVVLLDNSSTECSFNAENAILIKSYEIGCRDEALINLLPFLDALRFMKDVRSML- 242
            .:.....:||.|:::|||.....|:.|||:.::|:.....|..|::|:||.:.|....:|.:|| 
 Frog   207 DLSRLGRELSKVIIIDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSKEDNVYNMLN 271

  Fly   243 KRCTR 247
            |.|.|
 Frog   272 KLCNR 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12078NP_647795.2 HIF-SF_euk 70..237 CDD:274055 56/170 (33%)
ctdsplXP_031759361.1 HIF-SF_euk 106..264 CDD:274055 56/169 (33%)

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