DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and LARP6a

DIOPT Version :10

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_851141.1 Gene:LARP6a / 834667 AraportID:AT5G46250 Length:422 Species:Arabidopsis thaliana


Alignment Length:391 Identity:87/391 - (22%)
Similarity:142/391 - (36%) Gaps:112/391 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 VPVQLPANGSADPQQGS---HNAAGGEEP------NIPLDKLKQMLATQLEYYFSRENLANDTYL 291
            :|...|::...|.::.|   .:...||.|      .:|:|:|.|.:..|:|||||.|||..|.:|
plant    62 IPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFL 126

  Fly   292 LSQMDSDQ--YVPIYTVARFNLVRKLTNDINLITEVLRESP--NVQVDDKGL-RVRP-----NRK 346
            |:.|..::  :|||.|:|.|:.::|||.|..||...|:||.  .|..|:|.: |:.|     :.|
plant   127 LNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLPEIRDPK 191

  Fly   347 RCIIILREISNNTPLDDVKALFSNESCPRPIS-CEFAANNSWYITFESDEDAQKAYKYLREEVKE 410
            ...:::..:..:...::::.:|......:.:| |:..|       .|..|...|...::|..:..
plant   192 IFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNA-------VEESEKGGKKENFIRTRLHA 249

  Fly   411 F-QGKPIMARIKPKSFINRIQAVPKNGYRL----------------------TSPPTANVFDPAG 452
            | :.:.:.|..|..:.:|..|.. :||.|:                      ....|..|.|..|
plant   250 FVEYETVEAAEKAAATLNNEQDW-RNGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTG 313

  Fly   453 A------------------------GG-------ATVSYAAAQQPRYLYTNGAAIAAPASVQYSN 486
            .                        ||       ........|..|..:..|..|....:...|:
plant   314 GEKNKKTREHQNHRLHHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSH 378

  Fly   487 PVLIPIPQNQFYPGLVAGP-WPPGTVAATTAHGQNFYELGGNIFTTNPLPPQPVTAGFAQAPPPT 550
            |...|:..::..|    || .|.||...|...|:                         ..||||
plant   379 PNYHPVEVSKRPP----GPRMPDGTRGFTMGRGK-------------------------AIPPPT 414

  Fly   551 S 551
            |
plant   415 S 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 33/78 (42%)
RRM_LARP4_5_like 348..423 CDD:409864 11/76 (14%)
LARP6aNP_851141.1 LA 101..180 CDD:128955 34/78 (44%)
RRM_La_like_plant 193..282 CDD:409730 16/96 (17%)

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