DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and LARP1a

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_001190354.1 Gene:LARP1a / 832242 AraportID:AT5G21160 Length:833 Species:Arabidopsis thaliana


Alignment Length:736 Identity:148/736 - (20%)
Similarity:235/736 - (31%) Gaps:214/736 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 KNGYRLTSPPTANVFDPA-GAGGATVSYAAAQQPRYLYTNGAAIAAPASVQYSNPVLIPIP---- 493
            |:.::.|:.|...:..|. ||........||||||   .......|||....:.|..||||    
plant    25 KSPWKTTTSPVETIDAPVMGAHSWPALADAAQQPR---PKNPPAPAPAPPSKNIPTSIPIPTPAV 86

  Fly   494 -----------------------------QNQFYPGLVAGPWPPGTVAATTAHGQNFYEL----- 524
                                         .||..|     |.||..|.|...|...|..:     
plant    87 TGQAKSKGGGKANPGHKNPSGRHSKPGPRSNQNGP-----PPPPYLVHAVPYHPPPFPPMVPLPH 146

  Fly   525 -GGNIFTTNPLPPQPVTAGFAQAPPPTS-------QAM----VTPKPQGG-GRYNNNHRG-NPNN 575
             .|..|...|.||.||     ..||.|.       ||.    |.|.|||. |:...:.|| :|.|
plant   147 AAGPDFPYAPYPPYPV-----PVPPVTESGNEKQVQASPLPPVLPAPQGDPGKPWPHQRGFDPRN 206

  Fly   576 VGGANSGPRAESRSKPPRSTPSASHIQG---GNIMPI-QITAPIPGGMVSVVPTNIVQDPLQPAP 636
            : ...:|||  :..:||...|:...:.|   |...|: .:..|.||.:....|......|:...|
plant   207 M-PQGAGPR--NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGP 268

  Fly   637 LQQQPQ------QVIQQIQQQPSSSAQQQQAATVQMNNTTRHYPIK--SNWKGGMQKNLDKSYSG 693
            ....|:      :|::|::...|....:.....:.:.:.....|.|  :.:|......:|..:. 
plant   269 PILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFI- 332

  Fly   694 GVATHHHYTTQVQALPAHSHHLQAQ-QQLQGQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQ 757
                       |.|| ..|:.::.| .|::.:.:...:..||..:.||..:              
plant   333 -----------VYAL-GFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETI-------------- 371

  Fly   758 HQHHLVVQQTQPQQQQQQQQVVLQQQQVQVQELQEAGDGVEHSSHAMQQVNRSSNMSASSSSSLA 822
                                                |||.:.|..::...:...|.|..||....
plant   372 ------------------------------------GDGDKDSPKSITSGDNFGNPSKGSSKPTV 400

  Fly   823 TSMSKEPLQ-----------WQNRPRRRRR--------------DEEGGINYSPGGRVGLYGSSP 862
            :..|.|..|           .::....:|.              |||..:.:....:.|| ..|.
plant   401 SDFSSEGAQSSRTNNYKSGNLKSSADEKRNVEDLSNDFSNTFLLDEELDLEHRSPRKSGL-SMSK 464

  Fly   863 SNPHPQQHLMSSSTGSN-----VQSAGGTDGGGASHRGGERQSHY-----NTIHD-------VPP 910
            |..:....:........     .|::|.:||.|.   ||....:.     :||:|       ...
plant   465 SIEYEDDDMAVDDQDIQKLVIVTQNSGKSDGAGI---GGTEAKNIPKELASTINDGLYYFEQELK 526

  Fly   911 PQHRGNYKGNNYNPHYHAQHSSMASGSHHH---HHHNALSSQQQQHHLTTGTGQQGSGHHYHH-H 971
            .:..|..|.|:   |...:...:.||...:   ..::|.:...::|.:.|...:|..|.|.|| .
plant   527 KKRSGRRKNNS---HLDTKDGKIKSGEGLNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTA 588

  Fly   972 HHHNSIGSNVGNSGGLGVSSGGSGGGGSGGGSGSNS---------------LSGGSNERG-IHHS 1020
            |......||:.|:|.:..|...|..|...|.:..:|               |||.|...| :..|
plant   589 HARRFFSSNIRNNGNISESPPSSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKS 653

  Fly  1021 SLGYQGHQHQHQQQQQQQQQQ 1041
            ...:|...||..::...:|::
plant   654 FPPFQHPSHQLLEENGFKQEK 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400
RRM_LARP4_5_like 348..423 CDD:240876
LARP1aNP_001190354.1 LAM 279..351 CDD:153396 13/84 (15%)
DM15 670..710 CDD:128927 1/5 (20%)
DM15 712..749 CDD:128927
DM15 750..785 CDD:128927
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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