DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and LARP1a

DIOPT Version :10

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_001190354.1 Gene:LARP1a / 832242 AraportID:AT5G21160 Length:833 Species:Arabidopsis thaliana


Alignment Length:736 Identity:148/736 - (20%)
Similarity:235/736 - (31%) Gaps:214/736 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 KNGYRLTSPPTANVFDPA-GAGGATVSYAAAQQPRYLYTNGAAIAAPASVQYSNPVLIPIP---- 493
            |:.::.|:.|...:..|. ||........||||||   .......|||....:.|..||||    
plant    25 KSPWKTTTSPVETIDAPVMGAHSWPALADAAQQPR---PKNPPAPAPAPPSKNIPTSIPIPTPAV 86

  Fly   494 -----------------------------QNQFYPGLVAGPWPPGTVAATTAHGQNFYEL----- 524
                                         .||..|     |.||..|.|...|...|..:     
plant    87 TGQAKSKGGGKANPGHKNPSGRHSKPGPRSNQNGP-----PPPPYLVHAVPYHPPPFPPMVPLPH 146

  Fly   525 -GGNIFTTNPLPPQPVTAGFAQAPPPTS-------QAM----VTPKPQGG-GRYNNNHRG-NPNN 575
             .|..|...|.||.||     ..||.|.       ||.    |.|.|||. |:...:.|| :|.|
plant   147 AAGPDFPYAPYPPYPV-----PVPPVTESGNEKQVQASPLPPVLPAPQGDPGKPWPHQRGFDPRN 206

  Fly   576 VGGANSGPRAESRSKPPRSTPSASHIQG---GNIMPI-QITAPIPGGMVSVVPTNIVQDPLQPAP 636
            : ...:|||  :..:||...|:...:.|   |...|: .:..|.||.:....|......|:...|
plant   207 M-PQGAGPR--NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGP 268

  Fly   637 LQQQPQ------QVIQQIQQQPSSSAQQQQAATVQMNNTTRHYPIK--SNWKGGMQKNLDKSYSG 693
            ....|:      :|::|::...|....:.....:.:.:.....|.|  :.:|......:|..:. 
plant   269 PILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFI- 332

  Fly   694 GVATHHHYTTQVQALPAHSHHLQAQ-QQLQGQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQ 757
                       |.|| ..|:.::.| .|::.:.:...:..||..:.||..:              
plant   333 -----------VYAL-GFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETI-------------- 371

  Fly   758 HQHHLVVQQTQPQQQQQQQQVVLQQQQVQVQELQEAGDGVEHSSHAMQQVNRSSNMSASSSSSLA 822
                                                |||.:.|..::...:...|.|..||....
plant   372 ------------------------------------GDGDKDSPKSITSGDNFGNPSKGSSKPTV 400

  Fly   823 TSMSKEPLQ-----------WQNRPRRRRR--------------DEEGGINYSPGGRVGLYGSSP 862
            :..|.|..|           .::....:|.              |||..:.:....:.|| ..|.
plant   401 SDFSSEGAQSSRTNNYKSGNLKSSADEKRNVEDLSNDFSNTFLLDEELDLEHRSPRKSGL-SMSK 464

  Fly   863 SNPHPQQHLMSSSTGSN-----VQSAGGTDGGGASHRGGERQSHY-----NTIHD-------VPP 910
            |..:....:........     .|::|.:||.|.   ||....:.     :||:|       ...
plant   465 SIEYEDDDMAVDDQDIQKLVIVTQNSGKSDGAGI---GGTEAKNIPKELASTINDGLYYFEQELK 526

  Fly   911 PQHRGNYKGNNYNPHYHAQHSSMASGSHHH---HHHNALSSQQQQHHLTTGTGQQGSGHHYHH-H 971
            .:..|..|.|:   |...:...:.||...:   ..::|.:...::|.:.|...:|..|.|.|| .
plant   527 KKRSGRRKNNS---HLDTKDGKIKSGEGLNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTA 588

  Fly   972 HHHNSIGSNVGNSGGLGVSSGGSGGGGSGGGSGSNS---------------LSGGSNERG-IHHS 1020
            |......||:.|:|.:..|...|..|...|.:..:|               |||.|...| :..|
plant   589 HARRFFSSNIRNNGNISESPPSSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKS 653

  Fly  1021 SLGYQGHQHQHQQQQQQQQQQ 1041
            ...:|...||..::...:|::
plant   654 FPPFQHPSHQLLEENGFKQEK 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400
RRM_LARP4_5_like 348..423 CDD:409864
LARP1aNP_001190354.1 PHA03247 <52..268 CDD:223021 60/231 (26%)
LAM 279..351 CDD:153396 13/84 (15%)
DM15 670..710 CDD:128927 1/5 (20%)
DM15 712..749 CDD:128927
DM15 750..785 CDD:128927
Blue background indicates that the domain is not in the aligned region.

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