DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and LARP1c

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_567991.1 Gene:LARP1c / 829743 AraportID:AT4G35890 Length:523 Species:Arabidopsis thaliana


Alignment Length:378 Identity:90/378 - (23%)
Similarity:149/378 - (39%) Gaps:88/378 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PVYTNVPVETAMLATNLFGATTQIAASPAAAAAAHIPLITAAAAAAAAAG-APAVAPPVAVAPVA 84
            ||:.. |...|.....:.||::.    ||.:.....|...:::.:..:.| .|:.:...:..|| 
plant   114 PVWKR-PSNGASEVGPVMGASSW----PALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPV- 172

  Fly    85 TASAAQAAVVPAQQQQQAHPHQAQILAHTHVAHQQQQQQQQQ---------TIQQHLHQ------ 134
            |...|.|:|...:|..:|:|:...       .|.:|:..:|:         |:.|...|      
plant   173 TQGIANASVPAPKQAGRANPNPTP-------NHSRQRSFKQRNGASGSANGTVSQPSAQGSFTEL 230

  Fly   135 ---------QQQQQ---------SPHPAQHLTYGHQPALSQATAGGSGTISGGAVGPSGVVVEGQ 181
                     |.|:.         :.:|:|..:|.:|......:.||......|          .|
plant   231 PSHNPSPRGQNQKNGFASQNHGGTENPSQRDSYRNQNGNHHQSHGGRRNQEHG----------NQ 285

  Fly   182 DTNEYAIMNGALG--QTQDGT--VVCYTTDALNN-TNLVALDPQPHQIVVPVQ---------VPV 232
            :.......||..|  |:|.||  .|.:.:..:.. ...:|..|.|..|..|.:         :|.
plant   286 NWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMAAQPFPSHIPFPTELAQSSYYPRMPY 350

  Fly   233 QVPVPVQLPANGSADPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDS 297
            ..|:|     :|   ||...|.    ::|     .|...|..|::||||.|||..|.||...|::
plant   351 MTPIP-----HG---PQFFYHY----QDP-----PLHMKLHKQIQYYFSDENLITDIYLRGFMNN 398

  Fly   298 DQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVRPNRKRCII 350
            :.:||:..||.|..|.:||::|..|.|.|:.||:|:|....:|.|.|.:..::
plant   399 EGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVL 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 30/73 (41%)
RRM_LARP4_5_like 348..423 CDD:240876 0/3 (0%)
LARP1cNP_567991.1 LHP1 <182..448 CDD:227520 73/299 (24%)
LAM 372..442 CDD:153396 29/69 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto4235
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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