DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and Ssbl1

DIOPT Version :10

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:XP_038964967.1 Gene:Ssbl1 / 680385 RGDID:1592944 Length:402 Species:Rattus norvegicus


Alignment Length:211 Identity:51/211 - (24%)
Similarity:87/211 - (41%) Gaps:46/211 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 AAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ-YVPIYTVARFNLVRKLTND 318
            |..|:  |..:..|:..:..|:||||...||..|.:|..|:..|: :|.:.|:.:||.:.:||.|
  Rat     2 AENGD--NEKMAALEAKICHQIEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLTTD 64

  Fly   319 INLITEVLRESP----NVQVDDKGLRVRPNR-------------KRCIIILREISNNTPLDDVKA 366
            .|:|.:.|.:|.    .|..|...:|..|:|             |...:.::....:..|||:|.
  Rat    65 FNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTDATLDDIKE 129

  Fly   367 LFS------NESCPRPISCEFAANNSWYITFESDEDAQK-------AYK-----------YLREE 407
            ...      |....|.:...|  ..|.:..|:|.:.|:|       .||           |..::
  Rat   130 WLDDKGQILNIQMRRKLHKTF--KGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAKK 192

  Fly   408 VKEFQGKPIMARIKPK 423
            .:|.:...:.|::|.|
  Rat   193 NEERKQSKVEAKLKAK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 25/78 (32%)
RRM_LARP4_5_like 348..423 CDD:409864 18/98 (18%)
Ssbl1XP_038964967.1 LARP_3 10..91 CDD:153397 25/80 (31%)
RRM1_La 112..183 CDD:409733 14/72 (19%)
RRM2_La 230..306 CDD:409957
Blue background indicates that the domain is not in the aligned region.

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