DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and SSB

DIOPT Version :10

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_003133.1 Gene:SSB / 6741 HGNCID:11316 Length:408 Species:Homo sapiens


Alignment Length:209 Identity:49/209 - (23%)
Similarity:89/209 - (42%) Gaps:42/209 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 AAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ-YVPIYTVARFNLVRKLTND 318
            |..|:  |..:..|:..:..|:||||...||..|.:|..|:..|: :||:..:.:||.:.:||.|
Human     2 AENGD--NEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTD 64

  Fly   319 INLITEVLRESP----NVQVDDKGLRVRPNR-------------KRCIIILREISNNTPLDDVKA 366
            .|:|.|.|.:|.    .:..|...:|..|::             |...:.::....:..|||:|.
Human    65 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKE 129

  Fly   367 LFSNESCPRPI----SCEFAANNSWYITFESDEDAQK-------AYK-----------YLREEVK 409
            ...::.....|    :...|...|.::.|:|.|.|:|       .||           |..::.:
Human   130 WLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNE 194

  Fly   410 EFQGKPIMARIKPK 423
            |.:...:.|:::.|
Human   195 ERKQNKVEAKLRAK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 25/78 (32%)
RRM_LARP4_5_like 348..423 CDD:409864 17/96 (18%)
SSBNP_003133.1 LARP_3 10..91 CDD:153397 25/80 (31%)
RRM1_La 112..183 CDD:409733 14/70 (20%)
RRM_3 231..334 CDD:400913
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..408
Blue background indicates that the domain is not in the aligned region.

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