Protein Alignment Larp4B and larp6b

DIOPT Version :10

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: NP_001082877.1
• Gene: larp6b / 565767
• ZFINID: ZDB-GENE-041008-244
• Length: 471
• Species: Danio rerio
• Alignment Length: 469
• Identity: 91/469 - (19%)
• Similarity: 157/469 - (33%)
• Gaps: 171/469 - (36%)

  Fly   264 PLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ--YVPIYTVARFNLVRKLTNDINLITEVL 326
            |.|.:.|.:|||||.|.|.|||::|.:||..:..::  ||.:..:..|..:|.||.|........
Zfish    57 PNDDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTTLAAA 121

  Fly   327 RESPNVQVDDKGLRVR-----PNRKRCI----------------------------------IIL 352
            |.||.::|::.|.:||     |:...||                                  ..:
Zfish   122 RTSPQLEVNEMGTKVRRRTPVPDWLLCIPTSKLLLAWNFLDGAGPVKEKFESPGVEQLGIMEAAM 186

  Fly   353 REISNNTPLDDVKALFSNESCPRPIS------CEFAANNSWYITFESDEDAQKAYKYLREEVKEF 411
            |..|....:..::.|...:..|..:.      .|........:.:|..|.|:||::.|:  |:|.
Zfish   187 RVFSPYGTISSLRILRPGKEIPAELKRYTKKHLELGRKVCAVVEYEYLEGARKAFEALK--VEEQ 249

  Fly   412 QG---------------KP------------------IMAR--IKPKSFINRIQAVPKNGYRLTS 441
            ||               ||                  ::.|  .|.:.|:..::
Zfish   250 QGGRGICVVLLGSRGTRKPGCSQGLVDEEQEDCIDIDVLKRPDRKARQFVYSLE----------- 303

  Fly   442 PPTANVFDPAGAGGATVSYAAA--------QQPRYLYTNGAAIAAP-----ASVQYSNPVLIPIP 493
                   |.|....:...:|.|        .:|:.||  |:.:|.|     .|..|.||:..|
Zfish   304 -------DSAVCSSSESDFAPASPRPNRRVSRPQALY--GSPLAIPRVSTFRSDPYRNPLGSP-- 357

  Fly   494 QNQFYPGLVAGPWPPGTVAATTAHGQNFYELGGNIFTTNPLPPQPVTAGFAQAPPPTSQAMVTPK 558
                    |..|..|..:...:             ..|:||...|.::                .
Zfish   358 --------VGSPLQPRKLFPCS-------------HVTSPLATHPFSS----------------T 385

  Fly   559 PQGGG---RYNNNHRGNPNNVGGANSGPRAESRSKPPRSTPSASHIQGGNIMPIQITAPIPGGMV 620
            |.|.|   :|..:...:|::: |..|.|..:.|.       :|:.:    |.|...::..|..::
Zfish   386 PSGAGTSFKYKASGELSPDDL-GFTSSPWVQRRK-------NAAQV----IQPEMASSMSPSQLI 438

  Fly   621 SVVPTNIVQDPLQP 634
            ..:...:|:.|:.|
Zfish   439 KSLSVLVVRQPVGP 452

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	28/80 (35%)
		RRM_LARP4_5_like	348..423	CDD:409864	21/149 (14%)
larp6b	NP_001082877.1	LARP_6	62..138	CDD:153402	27/75 (36%)
		RRM_SF	181..261	CDD:473069	15/81 (19%)
		SUZ-C	<445..459	CDD:463745	3/8 (38%)