Protein Alignment Larp4B and larp4b

DIOPT Version :10

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: XP_021325871.2
• Gene: larp4b / 563742
• ZFINID: ZDB-GENE-061027-39
• Length: 1838
• Species: Danio rerio
• Alignment Length: 715
• Identity: 208/715 - (29%)
• Similarity: 300/715 - (41%)
• Gaps: 156/715 - (21%)

  Fly   206 TDALNNTNLVALDPQPHQIVVPVQVPVQV-PVPVQLPAN----GSADPQQGSHNAAGGEEPNIPL 265
            :|..||:.......:..|:...|::|... |..|.|.::    |....|..|.......:.:..|
Zfish  1187 SDGYNNSEDKGNWNEEQQVSTSVELPFAAQPESVYLGSSVIEKGIVSNQNTSMKGVDDSDSSRQL 1251

  Fly   266 DKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESP 330
            :.|::.|...||:..||||||||.||:|||||||||||.|:|..:.::|||.|::||:::|:..|
Zfish  1252 EDLREQLKATLEFCLSRENLANDMYLISQMDSDQYVPIVTLANLDQIKKLTTDVDLISDILKTLP 1316

  Fly   331 NVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDE 395
            .||||..|.:||||:.|||:|||||...|||::|:|||.:::.|:.|:||||.|::|:|||||:.
Zfish  1317 LVQVDKCGEKVRPNQNRCIVILREIPEATPLEEVEALFKSDNLPKFINCEFAYNDNWFITFESEA 1381

  Fly   396 DAQKAYKYLREEVKEFQGKPIMARIKPKSF-INRIQAVPKNGYRLTS--------------PPTA 445
            |||.||:|||||||.||||||.||||.|:. :|..  |||||||...              ||.
Zfish  1382 DAQLAYQYLREEVKTFQGKPIKARIKAKAIAVNTF--VPKNGYRPVDVSSNVQQRYTPYYIPPV- 1443

  Fly   446 NVFDPAGAGGATVSYAAAQQ-PRYLYTNGAAIAAPASVQYSNPVLI-PIPQNQFYPGLVAGP--- 505
                          |.|.|| |.|........:|..|  |.:|.|: |.|...|..|....|
Zfish  1444 --------------YGAQQQFPLYRLVTPQGWSATQS--YLDPTLVSPFPSPAFINGFAGSPTFK 1492

  Fly   506 --WPPGTVAATT------AHGQNFYEL---GGNIFTTNP-----LPPQPVTAGFAQAPP------ 548
              ..|.||...|      .|.:....|   .|.....||     .|.:.:..|  ..||
Zfish  1493 SATSPLTVRHYTHAPRNRNHNKTHIRLPTDRGTTLLENPAAFSTFPTERIPNG--TRPPQTHHLG 1555

  Fly   549 -----PTSQAMVTPKPQGGGRYNNNHRGNPNNVGGANSG-------------PRAESRSKPP--R 593
                 ||..|.......|.||...|......|.|....|             ||:.::|.||  .
Zfish  1556 SRPRLPTGLAYPRRDQVGSGRMEVNGADYSLNAGRGRRGGFGYRKRRDDNKFPRSGTQSPPPVQE 1620

  Fly   594 STPSASHIQGGNIMPIQITAPIPGGMVSVVP------------TNIVQDPLQPAPLQQQPQQVI- 645
            .|||.|...|.:..|     |:||...::.|            :::|...::..||.   :.|:
Zfish  1621 RTPSPSFELGLSSFP-----PLPGAAGNLKPEVKPENSLDNRLSDVVIGAVKDKPLN---KDVVT 1677

  Fly   646 -QQIQQQPSSSAQQQQAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALP 709
             :.|...|..|.|...|...|.       |:                     .|.|..:..|..|
Zfish  1678 SRVISGTPKESVQAAPAPAAQT-------PV---------------------DHQHSPSPAQTSP 1714

  Fly   710 AHSHHLQAQQQLQGQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQTQPQQQQQ 774
                   ...:...:||....:.:.:.||....::...|....|:|.:..:..:.|:.
Zfish  1715 -------TAVEKPKETQTPAEKCSDTHAAKTTPLSNPVTVSLQQEPRKPSYAEICQRI------- 1765

  Fly   775 QQQVVLQQQQVQVQELQEAGDGVEHSSHAMQQVNRSSNMSASSSSSLATSMSKEPLQWQNRPRRR 839
             ::...||.....:......:.|:....|.::...|::..|.|:   ||:..:|.::.|..|..|
Zfish  1766 -REAPTQQPSADPRAPSSTAEDVKTPDSAERRCKESASAPAKST---ATACPRETVKSQQSPGDR 1826

  Fly   840  839
            Zfish  1827  1826

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	40/73 (55%)
		RRM_LARP4_5_like	348..423	CDD:409864	49/74 (66%)
larp4b	XP_021325871.2	None