DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and larp4b

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:XP_021325871.1 Gene:larp4b / 563742 ZFINID:ZDB-GENE-061027-39 Length:1862 Species:Danio rerio


Alignment Length:715 Identity:208/715 - (29%)
Similarity:300/715 - (41%) Gaps:156/715 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 TDALNNTNLVALDPQPHQIVVPVQVPVQV-PVPVQLPAN----GSADPQQGSHNAAGGEEPNIPL 265
            :|..||:.......:..|:...|::|... |..|.|.::    |....|..|.......:.:..|
Zfish  1211 SDGYNNSEDKGNWNEEQQVSTSVELPFAAQPESVYLGSSVIEKGIVSNQNTSMKGVDDSDSSRQL 1275

  Fly   266 DKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESP 330
            :.|::.|...||:..||||||||.||:|||||||||||.|:|..:.::|||.|::||:::|:..|
Zfish  1276 EDLREQLKATLEFCLSRENLANDMYLISQMDSDQYVPIVTLANLDQIKKLTTDVDLISDILKTLP 1340

  Fly   331 NVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDE 395
            .||||..|.:||||:.|||:|||||...|||::|:|||.:::.|:.|:||||.|::|:|||||:.
Zfish  1341 LVQVDKCGEKVRPNQNRCIVILREIPEATPLEEVEALFKSDNLPKFINCEFAYNDNWFITFESEA 1405

  Fly   396 DAQKAYKYLREEVKEFQGKPIMARIKPKSF-INRIQAVPKNGYRLTS--------------PPTA 445
            |||.||:|||||||.||||||.||||.|:. :|..  |||||||...              ||. 
Zfish  1406 DAQLAYQYLREEVKTFQGKPIKARIKAKAIAVNTF--VPKNGYRPVDVSSNVQQRYTPYYIPPV- 1467

  Fly   446 NVFDPAGAGGATVSYAAAQQ-PRYLYTNGAAIAAPASVQYSNPVLI-PIPQNQFYPGLVAGP--- 505
                          |.|.|| |.|........:|..|  |.:|.|: |.|...|..|....|   
Zfish  1468 --------------YGAQQQFPLYRLVTPQGWSATQS--YLDPTLVSPFPSPAFINGFAGSPTFK 1516

  Fly   506 --WPPGTVAATT------AHGQNFYEL---GGNIFTTNP-----LPPQPVTAGFAQAPP------ 548
              ..|.||...|      .|.:....|   .|.....||     .|.:.:..|  ..||      
Zfish  1517 SATSPLTVRHYTHAPRNRNHNKTHIRLPTDRGTTLLENPAAFSTFPTERIPNG--TRPPQTHHLG 1579

  Fly   549 -----PTSQAMVTPKPQGGGRYNNNHRGNPNNVGGANSG-------------PRAESRSKPP--R 593
                 ||..|.......|.||...|......|.|....|             ||:.::|.||  .
Zfish  1580 SRPRLPTGLAYPRRDQVGSGRMEVNGADYSLNAGRGRRGGFGYRKRRDDNKFPRSGTQSPPPVQE 1644

  Fly   594 STPSASHIQGGNIMPIQITAPIPGGMVSVVP------------TNIVQDPLQPAPLQQQPQQVI- 645
            .|||.|...|.:..|     |:||...::.|            :::|...::..||.   :.|: 
Zfish  1645 RTPSPSFELGLSSFP-----PLPGAAGNLKPEVKPENSLDNRLSDVVIGAVKDKPLN---KDVVT 1701

  Fly   646 -QQIQQQPSSSAQQQQAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALP 709
             :.|...|..|.|...|...|.       |:                     .|.|..:..|..|
Zfish  1702 SRVISGTPKESVQAAPAPAAQT-------PV---------------------DHQHSPSPAQTSP 1738

  Fly   710 AHSHHLQAQQQLQGQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQTQPQQQQQ 774
                   ...:...:||....:.:.:.||....::...|....|:|.:..:..:.|:.       
Zfish  1739 -------TAVEKPKETQTPAEKCSDTHAAKTTPLSNPVTVSLQQEPRKPSYAEICQRI------- 1789

  Fly   775 QQQVVLQQQQVQVQELQEAGDGVEHSSHAMQQVNRSSNMSASSSSSLATSMSKEPLQWQNRPRRR 839
             ::...||.....:......:.|:....|.::...|::..|.|:   ||:..:|.::.|..|..|
Zfish  1790 -REAPTQQPSADPRAPSSTAEDVKTPDSAERRCKESASAPAKST---ATACPRETVKSQQSPGDR 1850

  Fly   840  839
            Zfish  1851  1850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 40/73 (55%)
RRM_LARP4_5_like 348..423 CDD:240876 49/74 (66%)
larp4bXP_021325871.1 LARP_5 1279..1353 CDD:153405 40/73 (55%)
RRM_LARP5 1358..1434 CDD:241150 49/75 (65%)
Atrophin-1 <1632..1862 CDD:331285 51/273 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586334
Domainoid 1 1.000 191 1.000 Domainoid score I3180
eggNOG 1 0.900 - - E1_KOG2591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 263 1.000 Inparanoid score I3073
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002064
OrthoInspector 1 1.000 - - otm24760
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22792
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3384
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.880

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