Sequence 1: | NP_647793.1 | Gene: | Larp4B / 38399 | FlyBaseID: | FBgn0035424 | Length: | 1531 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012825802.1 | Gene: | larp6 / 493506 | XenbaseID: | XB-GENE-493801 | Length: | 769 | Species: | Xenopus tropicalis |
Alignment Length: | 639 | Identity: | 116/639 - (18%) |
---|---|---|---|
Similarity: | 194/639 - (30%) | Gaps: | 239/639 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 168 GGAVGPSGVVVEGQDTNEYAIMNGALGQTQDGTVV--CYTTDALNNTNLVALDPQPH-------- 222
Fly 223 -QIVVPVQVPVQVPVPV----------------QLPANGSA----DPQQGSHNA----------- 255
Fly 256 --------AGGEEPNIPLD--------KLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ--YVP 302
Fly 303 IYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVRPNRKRCIIILREISNNTP------- 360
Fly 361 -------------------------------------LDDVKALFSNESCPRPISCEFAANNSW- 387
Fly 388 ------YITFESDEDAQKAYKYLREEVKEFQG-KPIMARIK-PKSFINRIQAVPKNGYRLTSPPT 444
Fly 445 AN--VFDPAGAGGATVSYAAAQQPRYLYTNGAAIAAPASVQYSNPVLIPIPQNQFYPGLVAGPWP 507
Fly 508 PGTVAATTAHGQNFYELGGNIFTTNPLPPQPVTAGFAQAPPPTSQAMVTPKPQGGGRYNNNHRGN 572
Fly 573 PNNVGGANSGPRAESRSKPPRSTPSASHIQGGNIMPIQITAPIPGGMVSVVPTNIVQDPLQPAPL 637
Fly 638 QQQPQQVIQQIQQQPSSS---AQQQQAATVQMNNTTRHYPIKSNWKGGMQKNLD 688 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Larp4B | NP_647793.1 | LARP_4_5_like | 269..343 | CDD:153400 | 23/75 (31%) |
RRM_LARP4_5_like | 348..423 | CDD:240876 | 17/127 (13%) | ||
larp6 | XP_012825802.1 | LARP_6 | 376..452 | CDD:153402 | 24/77 (31%) |
RRM_LARP6 | 467..575 | CDD:240735 | 13/108 (12%) | ||
SUZ-C | 743..757 | CDD:372374 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |