Protein Alignment Larp4B and larp6

DIOPT Version :9

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: XP_012825802.1
• Gene: larp6 / 493506
• XenbaseID: XB-GENE-493801
• Length: 769
• Species: Xenopus tropicalis
• Alignment Length: 639
• Identity: 116/639 - (18%)
• Similarity: 194/639 - (30%)
• Gaps: 239/639 - (37%)

  Fly   168 GGAVGPSGVVVEGQDTNEYAIMNGALGQTQDGTVV--CYTTDALNNTNLVALDPQPH-------- 222
            ||......||.|.|...:.:.:.|.||......:.  |..|:   ....|.|.|...
 Frog   220 GGDTSALYVVDECQSDEDLSTLCGYLGDLMPAIMAESCQPTE---GNGWVPLQPTDKMESFSMDW 281

  Fly   223 -QIVVPVQVPVQVPVPV----------------QLPANGSA----DPQQGSHNA----------- 255
             .:.:..::|:|:.:..                |:..|..:    |.::|...|
 Frog   282 PNLDLAERMPLQIDLGFGTFPGIECYGIGNHLGQIIINPESAENEDQEKGLMEAGDCSEDDSARQ 346

  Fly   256 --------AGGEEPNIPLD--------KLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ--YVP 302
                    :|||.....||        :|.|.|.||:|||.|.|||..|.:||..:..::  :|.
 Frog   347 DKYSGAATSGGENDGDELDQDWKPPDAELIQKLITQIEYYLSDENLEKDAFLLKHVRRNKMGFVS 411

  Fly   303 IYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVRPNRKRCIIILREISNNTP------- 360
            :..:..|..|:.||.|.......||.|..:::::...::|  ||..:.:..  |.|.|
 Frog   412 VKLLTSFKKVKHLTRDWRTTAYALRYSNLLELNEDNRKIR--RKTPVPVFP--SENLPSKMLLVY 472

  Fly   361 -------------------------------------LDDVKALFSNESCPRPISCEFAANNSW- 387
                                                 :..::.|......|..:. .|::..|.
 Frog   473 DLHFIPELNCLGKEQENGGMQEKVMEHLLKSFGTFGVISSIRILKPGRDLPSDVK-RFSSRYSQV 536

  Fly   388 ------YITFESDEDAQKAYKYLREEVKEFQG-KPIMARIK-PKSFINRIQAVPKNGYRLTSPPT 444
                  .:.||..|.|.||:.....|.....| |.::..:| ||..|.:.::..::...:....:
 Frog   537 GTKDCAIVEFEEVEAAIKAHDTFNVESDTEDGLKVVLIGMKPPKKKIQKDKSKEEDSKNVRKNKS 601

  Fly   445 AN--VFDPAGAGGATVSYAAAQQPRYLYTNGAAIAAPASVQYSNPVLIPIPQNQFYPGLVAGPWP 507
            .|  |.:....|..:..|::::..                  |||               ..|.
 Frog   602 LNKRVEELQYIGDESTVYSSSEPD------------------SNP---------------TSPM- 632

  Fly   508 PGTVAATTAHGQNFYELGGNIFTTNPLPPQPVTAGFAQAPPPTSQAMVTPKPQGGGRYNNNHRGN 572
                            :|..|.:||.|.|                          ..|.|||. :
 Frog   633 ----------------VGRKIQSTNKLSP--------------------------SAYPNNHL-S 654

  Fly   573 PNNVGGANSGPRAESRSKPPRSTPSASHIQGGNIMPIQITAPIPGGMVSVVPTNIVQDPLQPAPL 637
            ||               ..||::|.:|                |.|....|..:.:.|.:.| .:
 Frog   655 PN---------------ASPRNSPWSS----------------PCGQRKGVKHSPLADSMSP-EI 687

  Fly   638 QQQPQQVIQQIQQQPSSS---AQQQQAATVQMNNTTRHYPIKSNWKGGMQKNLD 688
            .::..:........||||   .:::||.||    |....|:.|...|...:|.|
 Frog   688 SRKCTEYSSDSSITPSSSPWVQRRRQAQTV----TQEKSPVGSPMLGRKIQNAD 737

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	23/75 (31%)
		RRM_LARP4_5_like	348..423	CDD:240876	17/127 (13%)
larp6	XP_012825802.1	LARP_6	376..452	CDD:153402	24/77 (31%)
		RRM_LARP6	467..575	CDD:240735	13/108 (12%)
		SUZ-C	743..757	CDD:372374

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910