DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and Larp7

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_524795.2 Gene:Larp7 / 44900 FlyBaseID:FBgn0260771 Length:595 Species:Drosophila melanogaster


Alignment Length:607 Identity:113/607 - (18%)
Similarity:200/607 - (32%) Gaps:223/607 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 PQPHQIVVPVQVPVQVPVPVQLPANGSADPQQGSHNAAGGEEPNIPLDKLKQMLAT----QLEYY 279
            |.|.....|.:...:.|.    |.:.|.|.:.|..             |.|:.|..    |:|:|
  Fly    23 PDPAAPTEPAEENSKEPA----PEDASPDKKDGGR-------------KRKRHLFNSIRGQMEFY 70

  Fly   280 FSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR-- 342
            |...||:.|.:|...::.|.|||:.....||.::.||.|:..|.:.|..|..:::|:..|:|:  
  Fly    71 FGDANLSKDRFLRRYVEQDPYVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELDETELKVKRR 135

  Fly   343 ---PNRKRC---IIILREISNNTPLDDVKALFSNESCPRPISC----------EFAANNSWYITF 391
               |:::..   .:.:..:..|...|.:|.:||.......:|.          |||     :|.|
  Fly   136 TKLPDQRDVNDKTLYVEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFA-----FIEF 195

  Fly   392 ESDEDAQKAYKYLRE---------------EVKEFQGKPIMAR--IKPKSFINRIQAVPKNGYR- 438
            |.....:||.|...:               .|:.||.:..:.:  .:|:|...::: :||...: 
  Fly   196 EKSGSLEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQVE-LPKRNLKR 259

  Fly   439 --------------------------LTSPPTANVFDPAGAGGATVSYAAAQQPRYLYTNGAAIA 477
                                      .|:..||:..|..|     .:.|:.|:.:...|:|...|
  Fly   260 EATDKDREEIHEVKRVKLEEGQPSETSTAGETASETDAEG-----TAEASEQEDKTEATDGDEAA 319

  Fly   478 ------------------APASVQYSNPVLIP------------------------------IPQ 494
                              .|::::..   ::|                              .||
  Fly   320 KKRRRKRKKKAIVDKPNIEPSALELK---VLPKTSWSSMRNKYLNLQRRIVSEAKSKLWRENHPQ 381

  Fly   495 NQFYPGLVAGPWPPGTVAATTAHGQNFYELGGNIFTTNPLPPQP----------VTAGFAQAPPP 549
            ||.:|                 |.|.         |::|..|:|          .|.|  :.|..
  Fly   382 NQQHP-----------------HHQQ---------TSHPNHPKPSQLPEAVKEEETGG--EVPSD 418

  Fly   550 TSQAMVTPKPQGGGRYNNNHRGNPN--NVGGANSGPRAESRSKPP--RSTPSASHIQGGNIMPIQ 610
            ..:..|...|....|....|:.|.|  ..||..|     ::|:.|  ..||...: :.|.|:...
  Fly   419 GGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGVES-----TKSEEPSQERTPLFKY-EPGLIVECS 477

  Fly   611 ITAPIPGGMVSVVPTNIVQDPLQPAPLQQQPQQVIQQIQQ----------QPSSSAQQQQAATVQ 665
            :..|.         ||:.:   ..|.::|.|......|::          .|:::.:..:    |
  Fly   478 LLKPC---------TNVKE---FKAEMRQYPDIKYVDIKEGDQVALLRLGTPAAAEELLR----Q 526

  Fly   666 MNNTTRHYPIKSNWKGGMQKNL 687
            :|.:.|...:.|    |.|:.|
  Fly   527 VNCSERQLKVLS----GQQETL 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 25/82 (30%)
RRM_LARP4_5_like 348..423 CDD:240876 18/104 (17%)
Larp7NP_524795.2 LA 57..135 CDD:128955 24/77 (31%)
RRM <116..>208 CDD:223796 21/96 (22%)
RRM1_LARP7 148..>209 CDD:240736 15/65 (23%)
RRM2_LARP7 471..548 CDD:240986 17/94 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456176
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22792
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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