DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and La

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster


Alignment Length:290 Identity:70/290 - (24%)
Similarity:105/290 - (36%) Gaps:99/290 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 VPVQVPVQVPVPVQL--PANGSA--DPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLA 286
            |..|..|..|...|:  ..||.|  ||...:..||||      ..|.::.:..|:||||...||.
  Fly    10 VEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGG------FTKQERAIIRQVEYYFGDANLN 68

  Fly   287 NDTYLLSQM--DSDQYVPIYTVARFNLVRKLTNDINLITEVLRESP----NVQVDDKGLRVRPNR 345
            .|.:|..|:  :.|.:||:..:..|..:..|:.|::.|...|.:|.    .:..|...||..|.|
  Fly    69 RDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPER 133

  Fly   346 --------KRCIIILREISNNT------PLD-DVKALFSNESCPRPISCEFAAN----------- 384
                    :|     :||...|      ||| .:..|.           :||||           
  Fly   134 PIPEHNEERR-----KEIQERTAYAKGFPLDSQISELL-----------DFAANYDKVVNLTMRK 182

  Fly   385 ------------NSWYITFESDEDAQK-------AYK-----------YLREEVKEF-------- 411
                        .|.::|||:.:.|:.       .||           ||:|:.:|:        
  Fly   183 HYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRK 247

  Fly   412 ---QGKPIMARIKPKSFINRIQAVPKNGYR 438
               :.||..|...||:.|...:..|:...|
  Fly   248 NKKEAKPEPAFELPKNAIVVFEGAPETSSR 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 22/79 (28%)
RRM_LARP4_5_like 348..423 CDD:240876 25/133 (19%)
LaNP_477014.1 LARP_3 47..129 CDD:153397 22/81 (27%)
RRM1_La 150..226 CDD:240737 16/86 (19%)
RRM_SF 263..338 CDD:302621 3/15 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456182
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22792
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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