Sequence 1: | NP_647793.1 | Gene: | Larp4B / 38399 | FlyBaseID: | FBgn0035424 | Length: | 1531 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_477014.1 | Gene: | La / 35305 | FlyBaseID: | FBgn0011638 | Length: | 390 | Species: | Drosophila melanogaster |
Alignment Length: | 290 | Identity: | 70/290 - (24%) |
---|---|---|---|
Similarity: | 105/290 - (36%) | Gaps: | 99/290 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 226 VPVQVPVQVPVPVQL--PANGSA--DPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLA 286
Fly 287 NDTYLLSQM--DSDQYVPIYTVARFNLVRKLTNDINLITEVLRESP----NVQVDDKGLRVRPNR 345
Fly 346 --------KRCIIILREISNNT------PLD-DVKALFSNESCPRPISCEFAAN----------- 384
Fly 385 ------------NSWYITFESDEDAQK-------AYK-----------YLREEVKEF-------- 411
Fly 412 ---QGKPIMARIKPKSFINRIQAVPKNGYR 438 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Larp4B | NP_647793.1 | LARP_4_5_like | 269..343 | CDD:153400 | 22/79 (28%) |
RRM_LARP4_5_like | 348..423 | CDD:240876 | 25/133 (19%) | ||
La | NP_477014.1 | LARP_3 | 47..129 | CDD:153397 | 22/81 (27%) |
RRM1_La | 150..226 | CDD:240737 | 16/86 (19%) | ||
RRM_SF | 263..338 | CDD:302621 | 3/15 (20%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45456182 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR22792 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.940 |