Protein Alignment Larp4B and larp6a

DIOPT Version :10

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: NP_956197.1
• Gene: larp6a / 334471
• ZFINID: ZDB-GENE-030131-6403
• Length: 485
• Species: Danio rerio
• Alignment Length: 490
• Identity: 100/490 - (20%)
• Similarity: 168/490 - (34%)
• Gaps: 144/490 - (29%)

  Fly   221 PHQIVVPVQVPVQVPV--------------PVQLPANGSADPQQGSHNAAGG---------EEPN 262
            |.:|..||.:.|.:..              .::|.....::.:.|.|:.:.|         ||..
Zfish     7 PREISAPVTITVAIQAAEEDDEPDEEPSCNTIELQTGSGSEDELGRHDKSSGAGTSGGELEEESW 71

  Fly   263 IPLD-KLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ--YVPIYTVARFNLVRKLTNDINLITE 324
            .|.| :|.|.|..|:|||.|.|||.:|.:||..:..::  :|.:..:..|..|:.||.|......
Zfish    72 QPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAY 136

  Fly   325 VLRESPNVQVDDKGLRVR-------------PNRKRCI--------------------------- 349
            .||.|..::::|:|.:||             |:|...:
Zfish   137 ALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGGDSNNGSGPTQQE 201

  Fly   350 ----IILREISNNTPLDDVKALFSNESCPRPIS------CEFAANNSWYITFESDEDAQKAYKYL 404
                ::|:...|..|:..|:.|...:..|..:.      .:........:.||..|.|.||::.:
Zfish   202 RLMELLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYSQLGTEECAIVEFEEVEAAMKAHEAV 266

  Fly   405 REEVKEFQG----KPIMARIKPKSFINRIQAVPKNGYRLTSPPTANVFDPAGAGGATVSYAAAQQ 465
            ..|... :|    |.::...||..     :.|||:..|           ..|.||...|.:...:
Zfish   267 GGEGGN-RGPLGLKVVLIGTKPPK-----KKVPKDRPR-----------DEGIGGMRKSRSLNSR 314

  Fly   466 PRYLYTNGAAIAAPASVQYSNPV-------------LIPIP--QNQFYPGLV--AGPWPPGTVAA 513
            .|.|..:|...||.:|...|||.             |.|..  .|...|.:.  :.||.....:.
Zfish   315 VRELQYHGDDSAASSSETESNPTSPRLARKSRSCNKLSPTSAGPNHLSPVVSPRSSPWSSPRASP 379

  Fly   514 TTAHGQNFYELGGNIFTTNPLPPQPVTAGFAQAPPPTSQAMVTPKPQGGGR----YNNNHRGNPN 574
            .|..            .|:|....|:          .|:..::|:|   ||    |:::....|:
Zfish   380 CTQR------------KTHPSGKSPL----------ASEGRLSPEP---GRRWADYSSDSSLTPS 419

  Fly   575 NVGGANSGPRAESRSKPPRSTPS-ASHIQGGNIMP 608
            .........:..|:...|..:|. |..||..:.:|
Zfish   420 GSPWVQRRKQVASQESSPVGSPMLARKIQNADGLP 454

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	26/88 (30%)
		RRM_LARP4_5_like	348..423	CDD:409864	16/115 (14%)
larp6a	NP_956197.1	LARP_6	79..155	CDD:153402	25/75 (33%)
		RRM_LARP6	170..284	CDD:409731	16/114 (14%)
		SUZ-C	441..473	CDD:463745	5/14 (36%)