DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Larp4B and ssb

DIOPT Version :10

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:XP_073808680.1 Gene:ssb / 321504 ZFINID:ZDB-GENE-030131-223 Length:485 Species:Danio rerio


Alignment Length:308 Identity:67/308 - (21%)
Similarity:109/308 - (35%) Gaps:120/308 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 ISGGAVGPSGVVVEGQDTNEYAIMNGALGQTQDGTVVCYTTDALNNTNLVALDPQPHQIVVPVQV 230
            ::||.:|..|..|..:.|||...                                   :|:..::
Zfish    56 LTGGVIGVDGYTVIQRSTNEVMF-----------------------------------VVILAKM 85

  Fly   231 PVQVPVPVQLPANGSADPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQM 295
                           ||.|:.|           ||:|   .:|.|:||||...||..|.:|..|:
Zfish    86 ---------------ADNQEMS-----------PLEK---KVAEQIEYYFGDHNLPRDKFLKEQL 121

  Fly   296 D-SDQYVPIYTVARFNLVRKLTNDINLITEVL-----------------RESPNVQVDDKGLRVR 342
            . .|.:||:.|:.:||.::.||::.::|.|.|                 |..||..:.:.....|
Zfish   122 QLDDGWVPLETMLKFNRLKSLTSEESVIVESLLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYR 186

  Fly   343 PNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFES-------------- 393
            ...|...|.::.....|.|||||              |:.|:..   |||:              
Zfish   187 DALKHKSIYMKGFPLETTLDDVK--------------EWLADKG---TFENIYLRKGPQKTFKGS 234

  Fly   394 ------DEDAQKAYKYLREEVKEFQGKPIMARIKPKSFINRIQAVPKN 435
                  .|:|.||: ..|:::|.|:|..::..:|...|..:|....:|
Zfish   235 IFAVLETEEAAKAF-VERDDIKNFKGNEMIVMMKDAYFTKKIAERKQN 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 25/91 (27%)
RRM_LARP4_5_like 348..423 CDD:409864 21/94 (22%)
ssbXP_073808680.1 None

Return to query results.
Submit another query.