Protein Alignment Larp4B and Larp6

DIOPT Version :9

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: NP_001101624.1
• Gene: Larp6 / 315731
• RGDID: 1308414
• Length: 492
• Species: Rattus norvegicus
• Alignment Length: 344
• Identity: 81/344 - (23%)
• Similarity: 128/344 - (37%)
• Gaps: 105/344 - (30%)

  Fly   241 PANGSA---DPQQGSHNA--AGGE------EP--NIPLDKLKQMLATQLEYYFSRENLANDTYLL 292
            |..|||   :|.:|..:|  :|||      ||  ..|.::|.:.|..|:|:|||.|||..|.:||
  Rat    52 PGWGSASEEEPSRGHSSATTSGGENDREDLEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLL 116

  Fly   293 SQMDSDQ--YVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR--------PNR-- 345
            ..:..::  ||.:..:..|..|:.||.|.......|:.|..:::::...:||        ||.
  Rat   117 KHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENL 181

  Fly   346 --KRCIIILREISNN-----TP-----------------------LDDVKALFSNESCP---RPI 377
              |..::....:|..     ||                       :..|:.|......|   |.|
  Rat   182 PSKMLLVYDLHLSPKLWSLATPPKNGRVQEKVMEYLLKLFGTFGVISSVRILKPGRELPPDIRRI 246

  Fly   378 SCEFA---ANNSWYITFESDEDAQKAYKYLREEVKEFQGKPIMARI---------KPKSFINRIQ 430
            |..::   ......:.||..:.|.||::::   ..|.|||..|..:         ||....|. :
  Rat   247 SSRYSQVGTQECAIVEFEEVDAAIKAHEFM---ATESQGKENMKAVLIGMRPPKKKPLKDKNH-E 307

  Fly   431 AVPKNGYRL----------------------TSPPTANVFDPAGAGGATVS----YAAAQQPRYL 469
            ..|..|.||                      :|.|.:|...|. ||...|:    ..:..|..:|
  Rat   308 DEPAAGTRLSRSLNKRVEELQYMGDESSANSSSDPESNPTSPM-AGRRHVASNKLSPSGHQNIFL 371

  Fly   470 YTNGAAIAAPASVQYSNPV 488
            ..|    |:|.|..:|:|:
  Rat   372 SPN----ASPCSSPWSSPL 386

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	23/83 (28%)
		RRM_LARP4_5_like	348..423	CDD:240876	20/117 (17%)
Larp6	NP_001101624.1	LARP_6	93..169	CDD:153402	22/75 (29%)
		RRM_LARP6	184..292	CDD:240735	20/110 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166345250
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.840