Protein Alignment Larp4B and Larp1b

DIOPT Version :9

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: XP_038958171.1
• Gene: Larp1b / 310348
• RGDID: 1307509
• Length: 537
• Species: Rattus norvegicus
• Alignment Length: 115
• Identity: 40/115 - (34%)
• Similarity: 63/115 - (54%)
• Gaps: 10/115 - (8%)

  Fly   264 PLDK--LKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVL 326
            |:::  ||:.:..|:|||||.|||..|.:|..:||...::||..:|.|:.|:.||.::|||.|.|
  Rat   411 PVEETLLKEYIKRQIEYYFSIENLERDFFLRRKMDEQGFLPISLIAGFHRVQALTTNLNLILEAL 475

  Fly   327 RESPNVQVDDKGLR--VRPNRKRCIIILREISNNTPLDDVKALFSNESCP 374
            ::|..|::.|:.:|  :.|.:..   |......|.|..|...|.   .||
  Rat   476 KDSTEVEIVDEKMRKKIEPEKWP---IPGPPPRNVPQTDFSQLI---DCP 519

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	30/75 (40%)
		RRM_LARP4_5_like	348..423	CDD:240876	7/27 (26%)
Larp1b	XP_038958171.1	LARP_2	418..490	CDD:153407	29/71 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166345249
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840