Protein Alignment Larp4B and Larp4b

DIOPT Version :10

• Sequence 1: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Sequence 2: XP_038951683.1
• Gene: Larp4b / 307070
• RGDID: 1310713
• Length: 766
• Species: Rattus norvegicus
• Alignment Length: 795
• Identity: 217/795 - (27%)
• Similarity: 332/795 - (41%)
• Gaps: 201/795 - (25%)

  Fly   115 VAHQQQQQQQQQTIQQHL-----HQQQQQQSPHPAQHLTYGHQPALSQA------TAGGS----- 163
            ||..|.|:.|:.....||     .|...|.|..||...|....|.....      :.||.
  Rat    10 VAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSLPALTQTLYQLPVSDDGVVWGWQSRGGQLVPTT 74

  Fly   164 ------------GT------ISGGAVG-----------PSGVVVEGQDTN---EYAIMNGALGQT 196
                        ||      .|..|||           |:....:|.|.|   :.:..|.||...
  Rat    75 KVSELNPNAKVWGTHMLHLEASSAAVGVNASWEEAPGRPTDCDQQGSDANGDGDKSRENAALPDA 139

  Fly   197 QDGTVVCYTTDALNNTNLVALDPQPHQIVVPVQVPVQVPVPVQLPANGSADPQQGSHNAAGGEEP 261
            |:......:|        :|||...::           |:|......|:....:..      |:|
  Rat   140 QEAEQTDMST--------LALDHAEYE-----------PLPENSDTGGNESQPESQ------EDP 179

  Fly   262 NIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVL 326
                   :::|...||:..||||||:|.||:|||||||||||.|||..:.::||:.|::||.|||
  Rat   180 -------REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL 237

  Fly   327 RESPNVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITF 391
            |..|.||||:||.:||||:.|||:||||||.:||:::|:|||..::.|:.|:||||.|::|:|||
  Rat   238 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITF 302

  Fly   392 ESDEDAQKAYKYLREEVKEFQGKPIMARIKPKSF-INRIQAVPKNGYRLTSPPTANVFDPAGAGG 455
            |::.|||:|||||||||:.||||||.||||.|:. ||..  :||||:|   |...|::.....
  Rat   303 ETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTF--LPKNGFR---PLDMNLYTQQRY-- 360

  Fly   456 ATVSYA----AAQQPRYLYTNGAAIAAPASVQYSNPVLI-PIPQNQFYPGLVAGPWPPGTVAATT 515
            ||..|.    :.||...||:..|......:..|.:|.|: |.|...|..|..:..:.|.|...|:
  Rat   361 ATSFYLPPVYSPQQQFPLYSLIAPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPATSPLTS 425

  Fly   516 ----------------AHGQNFYELGGNI--------FTTNPL-----PPQPVTAGFAQA--PPP 549
                            .|.....|.|..:        ||.:.|     .||...||..:.  ..|
  Rat   426 LRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNP 490

  Fly   550 TSQAMVTPKPQGGGRYNNNH--------RGNPNNVGGANSGPR----AESRSKPPRSTPSASHIQ 602
            ::.|   .:..|.||...:.        ||..|:.|.......    ::::|..|...||.|...
  Rat   491 SAYA---KREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFEL 552

  Fly   603 GGNIMPIQITAPIPGGMVSVVPTNIVQDPLQPAPLQQQPQQVIQQ----------IQQQPSSSAQ 657
            |.:..|     |:||...::...::.::.|....:....::.:..          :.::||..|.
  Rat   553 GLSNFP-----PLPGAAGNLKAEDLFENRLSSLIIGSSKERSLSTDASTNTAPVVVPREPSVPAP 612

  Fly   658 QQQAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALPAHSHHLQAQQQLQ 722
            ...:|..:.:.:..|.|   .|                    |:         |..|..|::|.:
  Rat   613 CAVSAAFERSPSPAHLP---EW--------------------HF---------HRDHKVAEKQRE 645

  Fly   723 GQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQT----------QPQQQQQQQQ 777
            ..:..:.....:::|..:.||....|  ..::|...:   :.|:|          ||.::|:...
  Rat   646 AHSVDRLPSTPTATACKSVQVNGAAT--ELRKPSYAE---ICQRTSKEPPSSSPLQPPKEQKPNT 705

  Fly   778 VVLQQQQVQVQELQE 792
            |...:::.::.|..|
  Rat   706 VACGKEEKKLAEPAE 720

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	43/73 (59%)
		RRM_LARP4_5_like	348..423	CDD:409864	48/74 (65%)
Larp4b	XP_038951683.1	LARP_5	180..254	CDD:153405	43/73 (59%)
		RRM_LARP5	259..335	CDD:410105	48/75 (64%)