Sequence 1: | NP_647793.1 | Gene: | Larp4B / 38399 | FlyBaseID: | FBgn0035424 | Length: | 1531 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038951683.1 | Gene: | Larp4b / 307070 | RGDID: | 1310713 | Length: | 766 | Species: | Rattus norvegicus |
Alignment Length: | 795 | Identity: | 217/795 - (27%) |
---|---|---|---|
Similarity: | 332/795 - (41%) | Gaps: | 201/795 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 115 VAHQQQQQQQQQTIQQHL-----HQQQQQQSPHPAQHLTYGHQPALSQA------TAGGS----- 163
Fly 164 ------------GT------ISGGAVG-----------PSGVVVEGQDTN---EYAIMNGALGQT 196
Fly 197 QDGTVVCYTTDALNNTNLVALDPQPHQIVVPVQVPVQVPVPVQLPANGSADPQQGSHNAAGGEEP 261
Fly 262 NIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVL 326
Fly 327 RESPNVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITF 391
Fly 392 ESDEDAQKAYKYLREEVKEFQGKPIMARIKPKSF-INRIQAVPKNGYRLTSPPTANVFDPAGAGG 455
Fly 456 ATVSYA----AAQQPRYLYTNGAAIAAPASVQYSNPVLI-PIPQNQFYPGLVAGPWPPGTVAATT 515
Fly 516 ----------------AHGQNFYELGGNI--------FTTNPL-----PPQPVTAGFAQA--PPP 549
Fly 550 TSQAMVTPKPQGGGRYNNNH--------RGNPNNVGGANSGPR----AESRSKPPRSTPSASHIQ 602
Fly 603 GGNIMPIQITAPIPGGMVSVVPTNIVQDPLQPAPLQQQPQQVIQQ----------IQQQPSSSAQ 657
Fly 658 QQQAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALPAHSHHLQAQQQLQ 722
Fly 723 GQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQT----------QPQQQQQQQQ 777
Fly 778 VVLQQQQVQVQELQE 792 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Larp4B | NP_647793.1 | LARP_4_5_like | 269..343 | CDD:153400 | 43/73 (59%) |
RRM_LARP4_5_like | 348..423 | CDD:240876 | 48/74 (65%) | ||
Larp4b | XP_038951683.1 | LARP_5 | 180..254 | CDD:153405 | 43/73 (59%) |
RRM_LARP5 | 259..335 | CDD:410105 | 48/75 (64%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166345244 | |
Domainoid | 1 | 1.000 | 72 | 1.000 | Domainoid score | I9108 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2591 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002064 | |
OrthoInspector | 1 | 1.000 | - | - | oto96347 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR22792 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
8 | 7.800 |