DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and Larp4b

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:XP_038951683.1 Gene:Larp4b / 307070 RGDID:1310713 Length:766 Species:Rattus norvegicus


Alignment Length:795 Identity:217/795 - (27%)
Similarity:332/795 - (41%) Gaps:201/795 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 VAHQQQQQQQQQTIQQHL-----HQQQQQQSPHPAQHLTYGHQPALSQA------TAGGS----- 163
            ||..|.|:.|:.....||     .|...|.|..||...|....|.....      :.||.     
  Rat    10 VAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSLPALTQTLYQLPVSDDGVVWGWQSRGGQLVPTT 74

  Fly   164 ------------GT------ISGGAVG-----------PSGVVVEGQDTN---EYAIMNGALGQT 196
                        ||      .|..|||           |:....:|.|.|   :.:..|.||...
  Rat    75 KVSELNPNAKVWGTHMLHLEASSAAVGVNASWEEAPGRPTDCDQQGSDANGDGDKSRENAALPDA 139

  Fly   197 QDGTVVCYTTDALNNTNLVALDPQPHQIVVPVQVPVQVPVPVQLPANGSADPQQGSHNAAGGEEP 261
            |:......:|        :|||...::           |:|......|:....:..      |:|
  Rat   140 QEAEQTDMST--------LALDHAEYE-----------PLPENSDTGGNESQPESQ------EDP 179

  Fly   262 NIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVL 326
                   :::|...||:..||||||:|.||:|||||||||||.|||..:.::||:.|::||.|||
  Rat   180 -------REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL 237

  Fly   327 RESPNVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITF 391
            |..|.||||:||.:||||:.|||:||||||.:||:::|:|||..::.|:.|:||||.|::|:|||
  Rat   238 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITF 302

  Fly   392 ESDEDAQKAYKYLREEVKEFQGKPIMARIKPKSF-INRIQAVPKNGYRLTSPPTANVFDPAGAGG 455
            |::.|||:|||||||||:.||||||.||||.|:. ||..  :||||:|   |...|::.....  
  Rat   303 ETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTF--LPKNGFR---PLDMNLYTQQRY-- 360

  Fly   456 ATVSYA----AAQQPRYLYTNGAAIAAPASVQYSNPVLI-PIPQNQFYPGLVAGPWPPGTVAATT 515
            ||..|.    :.||...||:..|......:..|.:|.|: |.|...|..|..:..:.|.|...|:
  Rat   361 ATSFYLPPVYSPQQQFPLYSLIAPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPATSPLTS 425

  Fly   516 ----------------AHGQNFYELGGNI--------FTTNPL-----PPQPVTAGFAQA--PPP 549
                            .|.....|.|..:        ||.:.|     .||...||..:.  ..|
  Rat   426 LRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNP 490

  Fly   550 TSQAMVTPKPQGGGRYNNNH--------RGNPNNVGGANSGPR----AESRSKPPRSTPSASHIQ 602
            ::.|   .:..|.||...:.        ||..|:.|.......    ::::|..|...||.|...
  Rat   491 SAYA---KREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFEL 552

  Fly   603 GGNIMPIQITAPIPGGMVSVVPTNIVQDPLQPAPLQQQPQQVIQQ----------IQQQPSSSAQ 657
            |.:..|     |:||...::...::.::.|....:....::.:..          :.::||..|.
  Rat   553 GLSNFP-----PLPGAAGNLKAEDLFENRLSSLIIGSSKERSLSTDASTNTAPVVVPREPSVPAP 612

  Fly   658 QQQAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALPAHSHHLQAQQQLQ 722
            ...:|..:.:.:..|.|   .|                    |:         |..|..|::|.:
  Rat   613 CAVSAAFERSPSPAHLP---EW--------------------HF---------HRDHKVAEKQRE 645

  Fly   723 GQTQQQHYQLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQT----------QPQQQQQQQQ 777
            ..:..:.....:::|..:.||....|  ..::|...:   :.|:|          ||.::|:...
  Rat   646 AHSVDRLPSTPTATACKSVQVNGAAT--ELRKPSYAE---ICQRTSKEPPSSSPLQPPKEQKPNT 705

  Fly   778 VVLQQQQVQVQELQE 792
            |...:::.::.|..|
  Rat   706 VACGKEEKKLAEPAE 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 43/73 (59%)
RRM_LARP4_5_like 348..423 CDD:240876 48/74 (65%)
Larp4bXP_038951683.1 LARP_5 180..254 CDD:153405 43/73 (59%)
RRM_LARP5 259..335 CDD:410105 48/75 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345244
Domainoid 1 1.000 72 1.000 Domainoid score I9108
eggNOG 1 0.900 - - E1_KOG2591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002064
OrthoInspector 1 1.000 - - oto96347
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22792
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.800

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