DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp4B and Larp4b

DIOPT Version :9

Sequence 1:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster
Sequence 2:XP_011242555.1 Gene:Larp4b / 217980 MGIID:106330 Length:1723 Species:Mus musculus


Alignment Length:966 Identity:253/966 - (26%)
Similarity:376/966 - (38%) Gaps:281/966 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 FGATTQIAASPAAAAAAHIPLITAAAAAAAAAGAPAVAPPVAVAPVATASAAQAAVVPAQQQQQA 102
            |..|....:|...::...:..|.....||:...||...|       |..:.....|||:..|.  
Mouse   854 FKKTALHDSSEVCSSLIDVKSIRVDMPAASPGNAPLAIP-------AIPADNTGCVVPSADQD-- 909

  Fly   103 HPHQAQILAHTHVAHQQQQQQQQQTIQQHLHQQQQQQSPHPAQHLTYGHQPAL-SQA---TAGGS 163
                       |:|...:...:..: :...|:..::...|.....:|.....| |||   .|||.
Mouse   910 -----------HIASPTEGVSENPS-EMDWHRIPEEFYAHFLNEFSYYPVGGLASQALSGLAGGC 962

  Fly   164 GTISGGAV----GPSGVVVEGQDTNE------YAIMNGA---------LGQTQDGTV-------- 201
            |....|.:    ....:..:.|..||      ..:.|.:         |..|:||.:        
Mouse   963 GRYQVGYLWANTATENMTEDAQFFNEDLHSKPQYLENTSFSLEQTPFQLPVTEDGVIWGWPSRGG 1027

  Fly   202 -VCYTT--DALN------NTNLVALDPQPHQIVV----------PVQVPVQVPVPVQLPANGSAD 247
             :..||  ..||      .|:::.|:.....:.|          |.....||   :.|.|||..|
Mouse  1028 QLVPTTKVSELNPNAKVWGTHMLHLEASSAAVGVNAAWEEAPGHPTDCDQQV---LGLDANGDGD 1089

  Fly   248 PQQGS-----------------------------HNAAGGEE--PNIPLDKLKQMLATQLEYYFS 281
            ..:.:                             :|..||.|  |....|. :::|...||:..|
Mouse  1090 KSRENAALPDAQEAEQTDMSTLALDHSEYEPLPENNDTGGNESQPESQEDP-REVLKKTLEFCLS 1153

  Fly   282 RENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVRPNRK 346
            |||||:|.||:|||||||||||.|||..:.::||:.|::||.||||..|.||||:||.:||||:.
Mouse  1154 RENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQN 1218

  Fly   347 RCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDEDAQKAYKYLREEVKEF 411
            |||:||||||.:||:::|:|||..::.|:.|:||||.|::|:||||::.|||:|||||||||:.|
Mouse  1219 RCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTF 1283

  Fly   412 QGKPIMARIKPKSF-INRIQAVPKNGYRLTSPPTANVFDPAGAGGATVSYAAAQQPRYLYTNGAA 475
            |||||.||||.|:. ||..  :||||:|   |...|::               .|.||       
Mouse  1284 QGKPIKARIKAKAIAINTF--LPKNGFR---PLDMNLY---------------TQQRY------- 1321

  Fly   476 IAAPASVQYSNPVLIPIPQNQFYPGLVAGPWPPGTVAATTAHGQNFYELGGNIFTTNPLPPQPVT 540
                |:..|..||.  .||.||                      ..|.|         :.||..:
Mouse  1322 ----ATSFYLPPVY--SPQQQF----------------------PLYSL---------ITPQTWS 1349

  Fly   541 AGFAQAPPPTSQAMVTPKPQGGGRYNNNHRGNPNNVGGANS-------GPRAESRSKPPRS-TPS 597
            ...:...||    :|||.|..|            .:.|..|       .|....|..|||| .||
Mouse  1350 TTHSYLDPP----LVTPFPSTG------------FINGFTSPTFKPATSPLTSLRQYPPRSRNPS 1398

  Fly   598 ASHIQGGNIMPIQITAPIPGGMVSVVPTNIVQDPL---QPAPLQQQPQQVIQQIQQQPSSSAQQQ 659
            .||::..    |..|...||.:.|....|...|.|   ..:|..:|..|...:| |.||:.|:::
Mouse  1399 KSHLRHA----IPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRI-QNPSAYAKRE 1458

  Fly   660 QAATVQMNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYT-TQVQA---------------- 707
                   ..|.|..|.......|:.:....|:.........:| :|.|:                
Mouse  1459 -------IGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLS 1516

  Fly   708 ----LPAHSHHLQAQQQLQ--------GQTQQQHYQLASSS---------AASAPQVTYVTTA-- 749
                ||..:.:|:.:...:        |.:::::....:|:         ..|.|....|:.|  
Mouse  1517 NFPPLPGAAGNLKTEDLFENRLSSLIIGSSKERNLSTDASTNTVPVVGPREPSVPAPCAVSAAFE 1581

  Fly   750 --PAPQQPGQHQHHLVVQQTQPQQQQQQQQV--------VLQQQQVQVQELQEAGDGVEHSSHAM 804
              |:|.       ||.......::|::.|.|        ....:.|||.     |...|....:.
Mouse  1582 RSPSPV-------HLPEDPKVAEKQRETQSVDRLPSTPTTTACKSVQVN-----GAATELRKPSY 1634

  Fly   805 QQVNRSSNMSASSSSSLATSMSKEPL--------QWQNRPRRRRRDEEGGINYSPG 852
            .::.:.::...||||.|.....::|.        :..:.|..|.| |...:..:||
Mouse  1635 AEICQRTSKDPSSSSPLQPPKEQKPSTVACGKEEKQLSEPVERHR-EPPALKSTPG 1689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 43/73 (59%)
RRM_LARP4_5_like 348..423 CDD:240876 48/74 (65%)
Larp4bXP_011242555.1 LARP_5 1141..1215 CDD:153405 43/73 (59%)
RRM_LARP5 1220..1296 CDD:241150 48/75 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841862
Domainoid 1 1.000 72 1.000 Domainoid score I9284
eggNOG 1 0.900 - - E1_KOG2591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002064
OrthoInspector 1 1.000 - - otm42917
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22792
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3384
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.830

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